Results 61 - 80 of 402 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5153 | 3' | -66.4 | NC_001798.1 | + | 23804 | 0.67 | 0.410856 |
Target: 5'- gCCgUgGCCCGgggccggcCCCCCGC-CCCCGGg -3' miRNA: 3'- aGGgGgCGGGU--------GGGGGCGuGGGGUUg -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 79706 | 0.67 | 0.402805 |
Target: 5'- gCCCCCGCUuccgacggaCGUCCUCGaaucgGCCCCGACg -3' miRNA: 3'- aGGGGGCGG---------GUGGGGGCg----UGGGGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 92008 | 0.67 | 0.402805 |
Target: 5'- aCCCCauCCCACCCauCC-CACCCCcACc -3' miRNA: 3'- aGGGGgcGGGUGGG--GGcGUGGGGuUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 105073 | 0.67 | 0.402805 |
Target: 5'- aCUCCCGacgaaCCCGCggCCCCGCGgCCCGcguACa -3' miRNA: 3'- aGGGGGC-----GGGUG--GGGGCGUgGGGU---UG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 130456 | 0.67 | 0.402805 |
Target: 5'- gCCCCCGgCCACUgCUGCuCCaCCAc- -3' miRNA: 3'- aGGGGGCgGGUGGgGGCGuGG-GGUug -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 32857 | 0.67 | 0.402805 |
Target: 5'- gCCCgaaggaagCCGCCC-CCCaCCGgACCaCCGGCc -3' miRNA: 3'- aGGG--------GGCGGGuGGG-GGCgUGG-GGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 407 | 0.67 | 0.402006 |
Target: 5'- aUCCCgCCGagcucgcggcagcCCCuccCCCCCGCGCgCCAc- -3' miRNA: 3'- -AGGG-GGC-------------GGGu--GGGGGCGUGgGGUug -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 96908 | 0.67 | 0.400409 |
Target: 5'- gCCCCaCGCCgccgggcugucggaCGCCgCCCGCGCgCgAGCg -3' miRNA: 3'- aGGGG-GCGG--------------GUGG-GGGCGUGgGgUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 60061 | 0.67 | 0.394855 |
Target: 5'- cCCCCCGCCgACCUggagCCGCcggaggACCgCCcGCa -3' miRNA: 3'- aGGGGGCGGgUGGG----GGCG------UGG-GGuUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 69868 | 0.67 | 0.394855 |
Target: 5'- cCCCCCacacacacuCCCACCCgacaGCACCCgGGCc -3' miRNA: 3'- aGGGGGc--------GGGUGGGgg--CGUGGGgUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 34546 | 0.67 | 0.394855 |
Target: 5'- -gCCCC-CCC-CCCCCGgAgccugggucCCCCGGCg -3' miRNA: 3'- agGGGGcGGGuGGGGGCgU---------GGGGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 32294 | 0.67 | 0.394855 |
Target: 5'- aCCUCCcUCgGCCCCCGCGCUgCuGCg -3' miRNA: 3'- aGGGGGcGGgUGGGGGCGUGGgGuUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 73308 | 0.67 | 0.394065 |
Target: 5'- -aCCCgGCCCacaggacacgcagGCCCgCGCGCCgUCGACg -3' miRNA: 3'- agGGGgCGGG-------------UGGGgGCGUGG-GGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 137350 | 0.67 | 0.394065 |
Target: 5'- aUCCCUgcguucgaCGCCCcaGCCCUgguccggCGCACCCCucGGCg -3' miRNA: 3'- -AGGGG--------GCGGG--UGGGG-------GCGUGGGG--UUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 99939 | 0.67 | 0.392489 |
Target: 5'- gCCCCgGaaugCCACgCCCGCGCcacugcgggaggcgCCCAGCg -3' miRNA: 3'- aGGGGgCg---GGUGgGGGCGUG--------------GGGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 107101 | 0.67 | 0.387007 |
Target: 5'- gCCCCCgGCCCucACCCUUguuuucgaccgGCACCCUAu- -3' miRNA: 3'- aGGGGG-CGGG--UGGGGG-----------CGUGGGGUug -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 23485 | 0.67 | 0.387007 |
Target: 5'- -aCgCCGCCCgcGCCCCCGCcagcGCCgCAGa -3' miRNA: 3'- agGgGGCGGG--UGGGGGCG----UGGgGUUg -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 52314 | 0.67 | 0.387007 |
Target: 5'- gUUUCgCGCCCugCCCCuggGCAgCCCCGGg -3' miRNA: 3'- -AGGGgGCGGGugGGGG---CGU-GGGGUUg -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 112991 | 0.67 | 0.382347 |
Target: 5'- cCCCCCaucccugaagcuuggGUCCggACCcgggCCCGCGCCgCCAGCa -3' miRNA: 3'- aGGGGG---------------CGGG--UGG----GGGCGUGG-GGUUG- -5' |
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5153 | 3' | -66.4 | NC_001798.1 | + | 58943 | 0.67 | 0.379262 |
Target: 5'- cUCCCCCGCCgACCa----GCCUCAGCc -3' miRNA: 3'- -AGGGGGCGGgUGGgggcgUGGGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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