miRNA display CGI


Results 41 - 60 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 44814 0.66 0.435597
Target:  5'- gUCUUCCGUCCccaucGCCCCUGCgaACCCgGAg -3'
miRNA:   3'- -AGGGGGCGGG-----UGGGGGCG--UGGGgUUg -5'
5153 3' -66.4 NC_001798.1 + 85480 0.66 0.435597
Target:  5'- uUCCUCUGCgCCAagugCCUgggCGCGCCCCAcuGCg -3'
miRNA:   3'- -AGGGGGCG-GGUg---GGG---GCGUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 2071 0.66 0.435597
Target:  5'- gCCCgCCGCgcucggcggaCCACUccggggggggCCCGC-CCCCGGCg -3'
miRNA:   3'- aGGG-GGCG----------GGUGG----------GGGCGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 52126 0.66 0.435597
Target:  5'- cUCgCCCGCUUcaACCCCgGCGCCgUCAAa -3'
miRNA:   3'- -AGgGGGCGGG--UGGGGgCGUGG-GGUUg -5'
5153 3' -66.4 NC_001798.1 + 67129 0.66 0.435597
Target:  5'- cUUCUCgGCgCCGCCCCUGgCAUCgCGACg -3'
miRNA:   3'- -AGGGGgCG-GGUGGGGGC-GUGGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 137257 0.66 0.435597
Target:  5'- cCCUCCGCCaccucgACCagaCUGCGguCCCCGGCg -3'
miRNA:   3'- aGGGGGCGGg-----UGGg--GGCGU--GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 154336 0.66 0.435597
Target:  5'- aCUCCCGCCCcgccucuuuuCCCCCGgGgagucaacCCCCGGg -3'
miRNA:   3'- aGGGGGCGGGu---------GGGGGCgU--------GGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 32040 0.66 0.43058
Target:  5'- gCCacgggCCGCUCGCCCcggcguccgcgggcgCCGCGCCCCcgucGGCg -3'
miRNA:   3'- aGGg----GGCGGGUGGG---------------GGCGUGGGG----UUG- -5'
5153 3' -66.4 NC_001798.1 + 119214 0.66 0.43058
Target:  5'- aUCCUCaCGCUCAuCCCCCggcugcucgcgcugaGCGCCCagGACg -3'
miRNA:   3'- -AGGGG-GCGGGU-GGGGG---------------CGUGGGg-UUG- -5'
5153 3' -66.4 NC_001798.1 + 35204 0.66 0.427254
Target:  5'- gCCCCUGCgUucguuGCUgCCGCGCCCCc-- -3'
miRNA:   3'- aGGGGGCGgG-----UGGgGGCGUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 70202 0.66 0.427254
Target:  5'- aCCUCCGCCgGCCgCCCuC-CCCCucgAGCg -3'
miRNA:   3'- aGGGGGCGGgUGG-GGGcGuGGGG---UUG- -5'
5153 3' -66.4 NC_001798.1 + 32370 0.66 0.427254
Target:  5'- gCCCCgaGCCCGgggCCCGCGaCCCGGCg -3'
miRNA:   3'- aGGGGg-CGGGUgg-GGGCGUgGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 42665 0.66 0.426425
Target:  5'- gUCCUCCuCCCACuCCUCGUcgccgggACCaCCGGCg -3'
miRNA:   3'- -AGGGGGcGGGUG-GGGGCG-------UGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 124161 0.66 0.42477
Target:  5'- gUCCCUGCgUCGCCCCgUGCAUgugguccaauauggCCCAGCg -3'
miRNA:   3'- aGGGGGCG-GGUGGGG-GCGUG--------------GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 126311 0.67 0.419007
Target:  5'- gUCUCCggaGCCCGCCCCgGguCCCgCcGCc -3'
miRNA:   3'- -AGGGGg--CGGGUGGGGgCguGGG-GuUG- -5'
5153 3' -66.4 NC_001798.1 + 110922 0.67 0.419007
Target:  5'- gCCCCCGCCgGCCCgCGgucaaACgCgGACa -3'
miRNA:   3'- aGGGGGCGGgUGGGgGCg----UGgGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 127426 0.67 0.418187
Target:  5'- cUCCUCGCCUAUCgcugcguUCUGCACCCCGc- -3'
miRNA:   3'- aGGGGGCGGGUGG-------GGGCGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 85309 0.67 0.410856
Target:  5'- gCCCgCgGCCCGCCCgCagACCCCAcgGCa -3'
miRNA:   3'- aGGG-GgCGGGUGGGgGcgUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 57120 0.67 0.410856
Target:  5'- gCCgCUGCCgACCCa-GCGgCCCGACg -3'
miRNA:   3'- aGGgGGCGGgUGGGggCGUgGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 23804 0.67 0.410856
Target:  5'- gCCgUgGCCCGgggccggcCCCCCGC-CCCCGGg -3'
miRNA:   3'- aGGgGgCGGGU--------GGGGGCGuGGGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.