miRNA display CGI


Results 21 - 40 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 15130 0.66 0.452561
Target:  5'- gUCCUcgggggguUCGCCguCCCCgGCGCCCUcaAACu -3'
miRNA:   3'- -AGGG--------GGCGGguGGGGgCGUGGGG--UUG- -5'
5153 3' -66.4 NC_001798.1 + 48793 0.66 0.452561
Target:  5'- aCCCCCGgCgAUUCCCuucGCgaggGCCCCGGCc -3'
miRNA:   3'- aGGGGGCgGgUGGGGG---CG----UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 65999 0.66 0.452561
Target:  5'- uUCCCaCCa-CgACCCCUGuCGCCCCAGg -3'
miRNA:   3'- -AGGG-GGcgGgUGGGGGC-GUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 76572 0.66 0.452561
Target:  5'- gUCCCgGCgaCCGgCCCCGCGCCguacgUCGACg -3'
miRNA:   3'- aGGGGgCG--GGUgGGGGCGUGG-----GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 84428 0.66 0.452561
Target:  5'- --gCCCGacucCCCACCCCCGC-CgCgCAGCg -3'
miRNA:   3'- aggGGGC----GGGUGGGGGCGuG-GgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 100157 0.66 0.452561
Target:  5'- aCCCCaaCGCCauCGCCUCCGCcACCgucggCCGGCg -3'
miRNA:   3'- aGGGG--GCGG--GUGGGGGCG-UGG-----GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 44515 0.66 0.444034
Target:  5'- gUCa--CGCCCACUUCCGU-CCCCAAUa -3'
miRNA:   3'- -AGgggGCGGGUGGGGGCGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 1334 0.66 0.444034
Target:  5'- aCUCCCGCCgCGgCCCgCGCAgCUCCGc- -3'
miRNA:   3'- aGGGGGCGG-GUgGGG-GCGU-GGGGUug -5'
5153 3' -66.4 NC_001798.1 + 74927 0.66 0.444034
Target:  5'- gCCgCCgGCCCACCuggaCCC-CACCguCCAGCg -3'
miRNA:   3'- aGG-GGgCGGGUGG----GGGcGUGG--GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 55676 0.66 0.444034
Target:  5'- gUCUCCGUUCACCCaCCaGUAaCCCGACg -3'
miRNA:   3'- aGGGGGCGGGUGGG-GG-CGUgGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 101513 0.66 0.444034
Target:  5'- gCUCCUaGCCCcCCCCCcuCACCCCu-- -3'
miRNA:   3'- aGGGGG-CGGGuGGGGGc-GUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 58880 0.66 0.444034
Target:  5'- gUCCCggGCCCggaACCCCCggagGCGCgCCGGCc -3'
miRNA:   3'- -AGGGggCGGG---UGGGGG----CGUGgGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 44551 0.66 0.444034
Target:  5'- aCCCgaaaugaaUCGCCauuuagccCCCCCGCAUCCCggUa -3'
miRNA:   3'- aGGG--------GGCGGgu------GGGGGCGUGGGGuuG- -5'
5153 3' -66.4 NC_001798.1 + 54886 0.66 0.444034
Target:  5'- cCCCCCGCCC-CCUCCGaggacgcagAUUCCAu- -3'
miRNA:   3'- aGGGGGCGGGuGGGGGCg--------UGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 67900 0.66 0.444034
Target:  5'- aCCCagaCCGCCCGCgUUgGCuuuuauCCCCGGCa -3'
miRNA:   3'- aGGG---GGCGGGUGgGGgCGu-----GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 81817 0.66 0.444034
Target:  5'- cUCCCCGCCCcgguCgCCCCGuCGCCgCuuccGCg -3'
miRNA:   3'- aGGGGGCGGGu---G-GGGGC-GUGGgGu---UG- -5'
5153 3' -66.4 NC_001798.1 + 137980 0.66 0.444034
Target:  5'- gCCCCCGCCUggGCgCgCCGCAgCUCGc- -3'
miRNA:   3'- aGGGGGCGGG--UGgG-GGCGUgGGGUug -5'
5153 3' -66.4 NC_001798.1 + 153212 0.66 0.444034
Target:  5'- aCCCuagaCCGCCCGacggCCCGgGCCCgCGGCg -3'
miRNA:   3'- aGGG----GGCGGGUgg--GGGCgUGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 19495 0.66 0.441493
Target:  5'- gCCCCCGCuggCCguuggcgacgagugGCCUCCGuCAUCCCAc- -3'
miRNA:   3'- aGGGGGCG---GG--------------UGGGGGC-GUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 28285 0.66 0.438961
Target:  5'- gCCCCCuUCCGCCCCaccuggcgcuacggcUGCGCaCCaCGACg -3'
miRNA:   3'- aGGGGGcGGGUGGGG---------------GCGUG-GG-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.