miRNA display CGI


Results 21 - 40 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 2071 0.66 0.435597
Target:  5'- gCCCgCCGCgcucggcggaCCACUccggggggggCCCGC-CCCCGGCg -3'
miRNA:   3'- aGGG-GGCG----------GGUGG----------GGGCGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 3074 0.66 0.469879
Target:  5'- cCCUCCGCCagCGCCUCCaGgAUCCCGcgGCa -3'
miRNA:   3'- aGGGGGCGG--GUGGGGG-CgUGGGGU--UG- -5'
5153 3' -66.4 NC_001798.1 + 3125 0.73 0.155167
Target:  5'- gCCaCgCgGCCCGCCUCCGCGCgCCGGCc -3'
miRNA:   3'- aGG-G-GgCGGGUGGGGGCGUGgGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 3532 0.67 0.371622
Target:  5'- gCCCCagccgaagcgGCCCGCCgCCauggCGUACCCCAGg -3'
miRNA:   3'- aGGGGg---------CGGGUGG-GG----GCGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 3862 0.68 0.328022
Target:  5'- gUCgCCCaGCCCGCCguacagcaCGCGCCCCGGg -3'
miRNA:   3'- -AGgGGG-CGGGUGGgg------GCGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 4020 0.67 0.379262
Target:  5'- gCCCguggcgucgcggCCGgCCACCgCCGCGCgggCCCGGCg -3'
miRNA:   3'- aGGG------------GGCgGGUGGgGGCGUG---GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 4150 0.69 0.314354
Target:  5'- gCCCUCGCgggCACCCCCGC-CUCCu-- -3'
miRNA:   3'- aGGGGGCGg--GUGGGGGCGuGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 4809 0.69 0.307684
Target:  5'- cUCCUCCgGCCCACCgugccaCCCGaACCCgGGCc -3'
miRNA:   3'- -AGGGGG-CGGGUGG------GGGCgUGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 4943 0.69 0.281469
Target:  5'- gUCCCCCGUCCuCgUCCGCcaucgcgACCUCGGCc -3'
miRNA:   3'- -AGGGGGCGGGuGgGGGCG-------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 5311 0.7 0.258207
Target:  5'- gCCCCgGCUCGCCgggguUCCGC-CCCCAGg -3'
miRNA:   3'- aGGGGgCGGGUGG-----GGGCGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 5360 0.7 0.275957
Target:  5'- -gCCCCGCCCcgACgCCCGCGCgUCcGCg -3'
miRNA:   3'- agGGGGCGGG--UGgGGGCGUGgGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 5416 0.68 0.364087
Target:  5'- gCCgCCGCuCCGCCCgCGCggcaucucauuaGCgCCCGGCg -3'
miRNA:   3'- aGGgGGCG-GGUGGGgGCG------------UG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 5560 0.78 0.067313
Target:  5'- gCUCCCGUUgGCCCCCGCcgGCCCCAAa -3'
miRNA:   3'- aGGGGGCGGgUGGGGGCG--UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 5733 0.67 0.378493
Target:  5'- -gCCCUGCCCgggGCCCgCGUcaucccgcgcuccGCCCCAAa -3'
miRNA:   3'- agGGGGCGGG---UGGGgGCG-------------UGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 5871 0.67 0.410856
Target:  5'- -gCCCUGCCCgggGCCCgCGuCAUCCCGc- -3'
miRNA:   3'- agGGGGCGGG---UGGGgGC-GUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 6147 0.72 0.178867
Target:  5'- cUCCCCCcCCCcCCCCCcCACCCUGuACg -3'
miRNA:   3'- -AGGGGGcGGGuGGGGGcGUGGGGU-UG- -5'
5153 3' -66.4 NC_001798.1 + 6987 0.68 0.356659
Target:  5'- cUCCCCUcuaccCCCACCCaaccaGCGCgCCGGCg -3'
miRNA:   3'- -AGGGGGc----GGGUGGGgg---CGUGgGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 7055 0.83 0.029125
Target:  5'- uUCCCCgGCCCACCCCCaaACCCCGGu -3'
miRNA:   3'- -AGGGGgCGGGUGGGGGcgUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 7501 0.7 0.264017
Target:  5'- gUCCCCuaCGCCC-CCCUCGgcaGCCCgGACc -3'
miRNA:   3'- -AGGGG--GCGGGuGGGGGCg--UGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 7587 0.69 0.294669
Target:  5'- gCCCgCGUCCGacaCCCGgGCCCCAAa -3'
miRNA:   3'- aGGGgGCGGGUgg-GGGCgUGGGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.