miRNA display CGI


Results 1 - 20 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 4 0.66 0.452561
Target:  5'- -gCCCCGCCUcuuuuCCCCCGgGgagucaacCCCCGGg -3'
miRNA:   3'- agGGGGCGGGu----GGGGGCgU--------GGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 102 0.69 0.282086
Target:  5'- -gCCCCGCgCGCCCCCuu-CCCCGu- -3'
miRNA:   3'- agGGGGCGgGUGGGGGcguGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 145 0.72 0.183117
Target:  5'- cUCCCCCgcgggcgccGCCCcucCCCCCGCGCgCCGc- -3'
miRNA:   3'- -AGGGGG---------CGGGu--GGGGGCGUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 219 0.79 0.058764
Target:  5'- uUCCCgCGCCCGCCCCCGCGCggcaggacggggaCUAGCa -3'
miRNA:   3'- -AGGGgGCGGGUGGGGGCGUGg------------GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 291 0.71 0.23071
Target:  5'- cUCCCCGCCC-CCCCgaagacgccaguCGCACCaCCGc- -3'
miRNA:   3'- aGGGGGCGGGuGGGG------------GCGUGG-GGUug -5'
5153 3' -66.4 NC_001798.1 + 361 0.74 0.144414
Target:  5'- cCCgCCCGCCCGCacacgguuCCCCGCcACCCCc-- -3'
miRNA:   3'- aGG-GGGCGGGUG--------GGGGCG-UGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 407 0.67 0.402006
Target:  5'- aUCCCgCCGagcucgcggcagcCCCuccCCCCCGCGCgCCAc- -3'
miRNA:   3'- -AGGG-GGC-------------GGGu--GGGGGCGUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 471 0.83 0.032264
Target:  5'- cUCCCCCGCggccgCCuCCCCCGCGCCCCGc- -3'
miRNA:   3'- -AGGGGGCG-----GGuGGGGGCGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 511 0.9 0.009376
Target:  5'- uUCCCCCGCCCcucCCCCCGCGCCCgCGGCc -3'
miRNA:   3'- -AGGGGGCGGGu--GGGGGCGUGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 556 0.69 0.307684
Target:  5'- -gCCCC-UCC-CUCCCGCGCCCCGu- -3'
miRNA:   3'- agGGGGcGGGuGGGGGCGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 688 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 733 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 778 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 823 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 868 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 898 0.72 0.187456
Target:  5'- nCCCCCGCCCgcccgACCCCCGaauaaACCacaCAAg -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCg----UGGg--GUUg -5'
5153 3' -66.4 NC_001798.1 + 1050 0.73 0.17063
Target:  5'- cUCCCCCGCucccggaaguuuCCcCCCCCGUcacuCCCCAAa -3'
miRNA:   3'- -AGGGGGCG------------GGuGGGGGCGu---GGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 1188 0.72 0.195494
Target:  5'- gCCgCCGCCCGCcgcggccagcaccguCCCCGCGCggcccgcggccgacgCCCAGCg -3'
miRNA:   3'- aGGgGGCGGGUG---------------GGGGCGUG---------------GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 1334 0.66 0.444034
Target:  5'- aCUCCCGCCgCGgCCCgCGCAgCUCCGc- -3'
miRNA:   3'- aGGGGGCGG-GUgGGG-GCGU-GGGGUug -5'
5153 3' -66.4 NC_001798.1 + 1365 0.7 0.246899
Target:  5'- gCCgCCGCgCACggCgUCGCGCCCCAGCg -3'
miRNA:   3'- aGGgGGCGgGUG--GgGGCGUGGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.