miRNA display CGI


Results 1 - 20 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 119716 1.07 0.000462
Target:  5'- uUCCCCCGCCCACCCCCGCACCCCAACc -3'
miRNA:   3'- -AGGGGGCGGGUGGGGGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 511 0.9 0.009376
Target:  5'- uUCCCCCGCCCcucCCCCCGCGCCCgCGGCc -3'
miRNA:   3'- -AGGGGGCGGGu--GGGGGCGUGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 150994 0.87 0.01698
Target:  5'- aCCCCCGCCCgACCCCCGCccgACCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGGGGGCG---UGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 151060 0.87 0.01698
Target:  5'- aCCCCCGCCCgACCCCCGCccgACCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGGGGGCG---UGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 151027 0.87 0.01698
Target:  5'- aCCCCCGCCCgACCCCCGCccgACCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGGGGGCG---UGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 31119 0.86 0.018344
Target:  5'- -gUCCCGCCCGCCCCCcgaagaGCGCCCCGGCg -3'
miRNA:   3'- agGGGGCGGGUGGGGG------CGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 151093 0.86 0.018822
Target:  5'- aCCCCCGCCCGcCCCCCGCccgACCCCcGCc -3'
miRNA:   3'- aGGGGGCGGGU-GGGGGCG---UGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 75796 0.84 0.024973
Target:  5'- -aCCCUGUUCGCCCCCGcCACCCCGACg -3'
miRNA:   3'- agGGGGCGGGUGGGGGC-GUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 823 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 733 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 688 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 868 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 778 0.84 0.028389
Target:  5'- aCCCCCGCCCgcccgACCCCCGCcCgCCCGACc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCGuG-GGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 7055 0.83 0.029125
Target:  5'- uUCCCCgGCCCACCCCCaaACCCCGGu -3'
miRNA:   3'- -AGGGGgCGGGUGGGGGcgUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 471 0.83 0.032264
Target:  5'- cUCCCCCGCggccgCCuCCCCCGCGCCCCGc- -3'
miRNA:   3'- -AGGGGGCG-----GGuGGGGGCGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 116637 0.82 0.033956
Target:  5'- -aCCCCGCCCACCCgCUGCAUCCCGc- -3'
miRNA:   3'- agGGGGCGGGUGGG-GGCGUGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 145954 0.82 0.036565
Target:  5'- aCCaCCCGCCCACccaccuaCCCCGCGCCCgCAGCc -3'
miRNA:   3'- aGG-GGGCGGGUG-------GGGGCGUGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 152125 0.82 0.039571
Target:  5'- gCCCCCgaGCCCACCgCCCGCGaccacCCCCAACc -3'
miRNA:   3'- aGGGGG--CGGGUGG-GGGCGU-----GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 145413 0.81 0.040592
Target:  5'- gCCCCCGCCCgGCCgCCgCGCGCCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGG-GG-GCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 145455 0.81 0.040592
Target:  5'- gCCCCCGCCCgGCCgCCgCGCGCCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGG-GG-GCGUGGGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.