miRNA display CGI


Results 21 - 40 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 145497 0.81 0.040592
Target:  5'- gCCCCCGCCCgGCCgCCgCGCGCCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGG-GG-GCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 145455 0.81 0.040592
Target:  5'- gCCCCCGCCCgGCCgCCgCGCGCCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGG-GG-GCGUGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 147052 0.81 0.044937
Target:  5'- gCCCCgGCCggagggGCCCCCGCACCUCGGCg -3'
miRNA:   3'- aGGGGgCGGg-----UGGGGGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 150891 0.8 0.048491
Target:  5'- gCCCCCGCaccgCCGCCCCCGCGCCggGGCg -3'
miRNA:   3'- aGGGGGCG----GGUGGGGGCGUGGggUUG- -5'
5153 3' -66.4 NC_001798.1 + 33616 0.8 0.051011
Target:  5'- gCCCgUGCCCACCCCC--GCCCCGGCg -3'
miRNA:   3'- aGGGgGCGGGUGGGGGcgUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 21304 0.8 0.051011
Target:  5'- cCCCCCGUCC-CCCCgGCcCCCCGGCc -3'
miRNA:   3'- aGGGGGCGGGuGGGGgCGuGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 27644 0.8 0.052319
Target:  5'- gCCgCCGCCCGCCUUCGCGCCCCc-- -3'
miRNA:   3'- aGGgGGCGGGUGGGGGCGUGGGGuug -5'
5153 3' -66.4 NC_001798.1 + 82409 0.8 0.054893
Target:  5'- gCCCCUGCCCcagccGCCCCUGCcccagccgccccuGCCCCAGCc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCG-------------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 82454 0.8 0.054893
Target:  5'- gCCCCUGCCCcagccGCCCCUGCcccagccgccccuGCCCCAGCc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCG-------------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 82499 0.8 0.054893
Target:  5'- gCCCCUGCCCcagccGCCCCUGCcccagccgccccuGCCCCAGCc -3'
miRNA:   3'- aGGGGGCGGG-----UGGGGGCG-------------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 54628 0.79 0.056439
Target:  5'- cCUCCCGCCCcgcaaCCCCGCGCCCCccgAGCa -3'
miRNA:   3'- aGGGGGCGGGug---GGGGCGUGGGG---UUG- -5'
5153 3' -66.4 NC_001798.1 + 24693 0.79 0.057881
Target:  5'- cCCggCCCGCCgCGCCCCCGCGCCCgGGg -3'
miRNA:   3'- aGG--GGGCGG-GUGGGGGCGUGGGgUUg -5'
5153 3' -66.4 NC_001798.1 + 219 0.79 0.058764
Target:  5'- uUCCCgCGCCCGCCCCCGCGCggcaggacggggaCUAGCa -3'
miRNA:   3'- -AGGGgGCGGGUGGGGGCGUGg------------GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 21467 0.79 0.059359
Target:  5'- gUCCCCCGCCCGuCCCCCcggccgGCcCCCCGGg -3'
miRNA:   3'- -AGGGGGCGGGU-GGGGG------CGuGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 121266 0.79 0.060873
Target:  5'- gUCCCgCUGUCCGCCCUCGUgcgcggccGCCCCGACg -3'
miRNA:   3'- -AGGG-GGCGGGUGGGGGCG--------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 76281 0.79 0.062425
Target:  5'- cUCCCCCcCCCGCCCCCccuCGCCaCCAGCc -3'
miRNA:   3'- -AGGGGGcGGGUGGGGGc--GUGG-GGUUG- -5'
5153 3' -66.4 NC_001798.1 + 154557 0.79 0.062425
Target:  5'- uUCCCgCGCCCGCCCCCGCGCggCAGg -3'
miRNA:   3'- -AGGGgGCGGGUGGGGGCGUGggGUUg -5'
5153 3' -66.4 NC_001798.1 + 22452 0.79 0.062425
Target:  5'- cUUUCCC-CCCGCCCCgCGCGCCCCGAg -3'
miRNA:   3'- -AGGGGGcGGGUGGGG-GCGUGGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 48408 0.79 0.064015
Target:  5'- gCCCCCGCCCGCucggcuucccguCCCCGCcGCCCCcuCg -3'
miRNA:   3'- aGGGGGCGGGUG------------GGGGCG-UGGGGuuG- -5'
5153 3' -66.4 NC_001798.1 + 82063 0.79 0.066307
Target:  5'- cCCCCCggggccccgcggccgGCCCACCCCgGCGCCUCAcGCg -3'
miRNA:   3'- aGGGGG---------------CGGGUGGGGgCGUGGGGU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.