miRNA display CGI


Results 1 - 20 of 402 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 3' -66.4 NC_001798.1 + 154557 0.79 0.062425
Target:  5'- uUCCCgCGCCCGCCCCCGCGCggCAGg -3'
miRNA:   3'- -AGGGgGCGGGUGGGGGCGUGggGUUg -5'
5153 3' -66.4 NC_001798.1 + 154483 0.72 0.183117
Target:  5'- cUCCCCCgcgggcgccGCCCcucCCCCCGCGCgCCGc- -3'
miRNA:   3'- -AGGGGG---------CGGGu--GGGGGCGUGgGGUug -5'
5153 3' -66.4 NC_001798.1 + 154440 0.69 0.282086
Target:  5'- -gCCCCGCgCGCCCCCuu-CCCCGu- -3'
miRNA:   3'- agGGGGCGgGUGGGGGcguGGGGUug -5'
5153 3' -66.4 NC_001798.1 + 154336 0.66 0.435597
Target:  5'- aCUCCCGCCCcgccucuuuuCCCCCGgGgagucaacCCCCGGg -3'
miRNA:   3'- aGGGGGCGGGu---------GGGGGCgU--------GGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 153212 0.66 0.444034
Target:  5'- aCCCuagaCCGCCCGacggCCCGgGCCCgCGGCg -3'
miRNA:   3'- aGGG----GGCGGGUgg--GGGCgUGGG-GUUG- -5'
5153 3' -66.4 NC_001798.1 + 152614 0.76 0.099493
Target:  5'- cCCCCCGCCgAcgcagaugggagucCCCCCgGCGCCCCGccgGCg -3'
miRNA:   3'- aGGGGGCGGgU--------------GGGGG-CGUGGGGU---UG- -5'
5153 3' -66.4 NC_001798.1 + 152496 0.7 0.275957
Target:  5'- uUCCCCCaa-UAgCCgCGCGCCCCGGCg -3'
miRNA:   3'- -AGGGGGcggGUgGGgGCGUGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 152125 0.82 0.039571
Target:  5'- gCCCCCgaGCCCACCgCCCGCGaccacCCCCAACc -3'
miRNA:   3'- aGGGGG--CGGGUGG-GGGCGU-----GGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 152019 0.69 0.282086
Target:  5'- cUCCCUGCCU-CCCUCGCccCCCCAGa -3'
miRNA:   3'- aGGGGGCGGGuGGGGGCGu-GGGGUUg -5'
5153 3' -66.4 NC_001798.1 + 151990 0.69 0.282086
Target:  5'- cUCCCCC-CCUGuCCCCCGCuCUCgGGCu -3'
miRNA:   3'- -AGGGGGcGGGU-GGGGGCGuGGGgUUG- -5'
5153 3' -66.4 NC_001798.1 + 151860 0.78 0.074406
Target:  5'- aCCCCCGCgCCGuguCCCCCGUgucccucccucACCCCGGCc -3'
miRNA:   3'- aGGGGGCG-GGU---GGGGGCG-----------UGGGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 151539 0.69 0.288324
Target:  5'- uUCCUCCucacccacggGCCCACCCCCacaggaucccuGCGCgUCGGCg -3'
miRNA:   3'- -AGGGGG----------CGGGUGGGGG-----------CGUGgGGUUG- -5'
5153 3' -66.4 NC_001798.1 + 151093 0.86 0.018822
Target:  5'- aCCCCCGCCCGcCCCCCGCccgACCCCcGCc -3'
miRNA:   3'- aGGGGGCGGGU-GGGGGCG---UGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 151060 0.87 0.01698
Target:  5'- aCCCCCGCCCgACCCCCGCccgACCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGGGGGCG---UGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 151027 0.87 0.01698
Target:  5'- aCCCCCGCCCgACCCCCGCccgACCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGGGGGCG---UGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 150994 0.87 0.01698
Target:  5'- aCCCCCGCCCgACCCCCGCccgACCCCcGCc -3'
miRNA:   3'- aGGGGGCGGG-UGGGGGCG---UGGGGuUG- -5'
5153 3' -66.4 NC_001798.1 + 150891 0.8 0.048491
Target:  5'- gCCCCCGCaccgCCGCCCCCGCGCCggGGCg -3'
miRNA:   3'- aGGGGGCG----GGUGGGGGCGUGGggUUG- -5'
5153 3' -66.4 NC_001798.1 + 150776 0.75 0.116125
Target:  5'- gCCCCCagacccagauCCCACCCCCGC-CCgCAACg -3'
miRNA:   3'- aGGGGGc---------GGGUGGGGGCGuGGgGUUG- -5'
5153 3' -66.4 NC_001798.1 + 150684 0.73 0.17063
Target:  5'- gUCUUCGCCCACCCgCGCGCCUgcGCg -3'
miRNA:   3'- aGGGGGCGGGUGGGgGCGUGGGguUG- -5'
5153 3' -66.4 NC_001798.1 + 149135 0.74 0.137297
Target:  5'- cCCCCCcCCCACCUCCcccugcccccgagGCGCCUCGGCc -3'
miRNA:   3'- aGGGGGcGGGUGGGGG-------------CGUGGGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.