miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 5' -51.7 NC_001798.1 + 2082 0.66 0.991822
Target:  5'- uCGGCGGAC--CACUccg--GGGGGGGc -3'
miRNA:   3'- -GUUGCCUGuuGUGAcaacaUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 5081 0.69 0.943957
Target:  5'- ---gGGGCGGCAgUGg---GGGGGGGu -3'
miRNA:   3'- guugCCUGUUGUgACaacaUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 9656 0.66 0.986293
Target:  5'- gCAGCGGGCcGCGCgcggagGgcgcgGgauGGGGGGc -3'
miRNA:   3'- -GUUGCCUGuUGUGa-----Caa---Cau-CCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 9715 0.68 0.97028
Target:  5'- uCGACGGGCucGgGCUGgcGcUGGGGGaGGu -3'
miRNA:   3'- -GUUGCCUGu-UgUGACaaC-AUCCCC-CC- -5'
5153 5' -51.7 NC_001798.1 + 10269 0.68 0.967203
Target:  5'- ---gGGAUAACACgaggGUgcGUcGGGGGGg -3'
miRNA:   3'- guugCCUGUUGUGa---CAa-CAuCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 10301 0.69 0.956635
Target:  5'- gGGgGGACGACGggGggGggguugGGGGGGGa -3'
miRNA:   3'- gUUgCCUGUUGUgaCaaCa-----UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 11338 0.66 0.989334
Target:  5'- aCGACGaACGGCGuCgggGUU-UGGGGGGGg -3'
miRNA:   3'- -GUUGCcUGUUGU-Ga--CAAcAUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 12879 0.67 0.980537
Target:  5'- cCGGCGG-CAGCaggguGCUGgUGUAcGGGGGc -3'
miRNA:   3'- -GUUGCCuGUUG-----UGACaACAUcCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 13257 0.66 0.991822
Target:  5'- gAugGGGCAgacccccaACGacUUGUUGUAGGGGc- -3'
miRNA:   3'- gUugCCUGU--------UGU--GACAACAUCCCCcc -5'
5153 5' -51.7 NC_001798.1 + 15347 0.7 0.917908
Target:  5'- gCGGgGGGCGAgGCgGUg--AGGGGGGa -3'
miRNA:   3'- -GUUgCCUGUUgUGaCAacaUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 15481 0.66 0.989334
Target:  5'- gGGCGGGgGggucguggGgGCUGgUGUGGuGGGGGg -3'
miRNA:   3'- gUUGCCUgU--------UgUGACaACAUC-CCCCC- -5'
5153 5' -51.7 NC_001798.1 + 16201 0.66 0.987887
Target:  5'- -cACGGGCcgcccuccGCACgcgccgccUGUGGGGGGGc -3'
miRNA:   3'- guUGCCUGu-------UGUGaca-----ACAUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 26523 0.68 0.967203
Target:  5'- gCGGCGGGCGGCgGCgUGgagGUGGuGGGGa -3'
miRNA:   3'- -GUUGCCUGUUG-UG-ACaa-CAUC-CCCCc -5'
5153 5' -51.7 NC_001798.1 + 26615 0.67 0.980537
Target:  5'- gGACGacGACGACggACUGUUuggggaGUgacGGGGGGGg -3'
miRNA:   3'- gUUGC--CUGUUG--UGACAA------CA---UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 27039 0.67 0.979424
Target:  5'- gGGCGGGCGGCACgucucccgcgcccgcGGGGGGu -3'
miRNA:   3'- gUUGCCUGUUGUGacaacau--------CCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 27396 0.69 0.956635
Target:  5'- gAGCGGugGuGCgACUGgcGUcuucGGGGGGGc -3'
miRNA:   3'- gUUGCCugU-UG-UGACaaCA----UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 30823 0.67 0.982626
Target:  5'- -cGCGGACGgccccGCGCUcccUGUcgcuGGGGGGa -3'
miRNA:   3'- guUGCCUGU-----UGUGAca-ACAu---CCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 30925 0.68 0.97028
Target:  5'- cCGACGGugAGgGCggcggggGUcgGgcGGGGGGc -3'
miRNA:   3'- -GUUGCCugUUgUGa------CAa-CauCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 31237 0.71 0.892609
Target:  5'- gCAGCGG-CGGCGCcccGUUGcGGGcGGGGg -3'
miRNA:   3'- -GUUGCCuGUUGUGa--CAACaUCC-CCCC- -5'
5153 5' -51.7 NC_001798.1 + 32815 0.66 0.989334
Target:  5'- -cGCGGGC--CACggGgaGUAGGGGGa -3'
miRNA:   3'- guUGCCUGuuGUGa-CaaCAUCCCCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.