miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 5' -51.7 NC_001798.1 + 148386 0.69 0.95265
Target:  5'- gGGCGGGCGugGCgGgcaggUGUGcGGGcGGGg -3'
miRNA:   3'- gUUGCCUGUugUGaCa----ACAU-CCC-CCC- -5'
5153 5' -51.7 NC_001798.1 + 148279 0.69 0.95265
Target:  5'- gGGCGGGCGugGCgGgcaggUGUGcGGGcGGGg -3'
miRNA:   3'- gUUGCCUGUugUGaCa----ACAU-CCC-CCC- -5'
5153 5' -51.7 NC_001798.1 + 130205 0.69 0.943957
Target:  5'- gGugGGAC-ACGCUcgcGUAGGGGGu -3'
miRNA:   3'- gUugCCUGuUGUGAcaaCAUCCCCCc -5'
5153 5' -51.7 NC_001798.1 + 125662 0.67 0.975804
Target:  5'- aGGCGGGgGcgGCUGagGUcAGGGGGGu -3'
miRNA:   3'- gUUGCCUgUugUGACaaCA-UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 122109 0.69 0.943957
Target:  5'- cCGGCGGGgGGCGCU-UUGccagccGGGGGGGc -3'
miRNA:   3'- -GUUGCCUgUUGUGAcAACa-----UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 119750 0.98 0.040881
Target:  5'- cCAACGGACAA-ACUGUUGUAGGGGGGg -3'
miRNA:   3'- -GUUGCCUGUUgUGACAACAUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 105715 0.73 0.786056
Target:  5'- aCAGCGGuCGACacccagggGCUGUUGUcGGGuGGGu -3'
miRNA:   3'- -GUUGCCuGUUG--------UGACAACAuCCC-CCC- -5'
5153 5' -51.7 NC_001798.1 + 101932 0.67 0.980537
Target:  5'- gCAACuGGGgGAUACgaggGUGGGGGGa -3'
miRNA:   3'- -GUUG-CCUgUUGUGacaaCAUCCCCCc -5'
5153 5' -51.7 NC_001798.1 + 101886 0.68 0.967203
Target:  5'- -uGCGGGgGAgGgCUGaUGUAGcGGGGGa -3'
miRNA:   3'- guUGCCUgUUgU-GACaACAUC-CCCCC- -5'
5153 5' -51.7 NC_001798.1 + 85996 0.67 0.982626
Target:  5'- --cCGGG--GCGCUGgcGcAGGGGGGu -3'
miRNA:   3'- guuGCCUguUGUGACaaCaUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 69635 0.82 0.356981
Target:  5'- cCAACGGGCGA----GUUGUGGGGGGGg -3'
miRNA:   3'- -GUUGCCUGUUgugaCAACAUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 68132 0.71 0.88568
Target:  5'- aGACGGcgAgGGCGgaGUuggugUGUAGGGGGGg -3'
miRNA:   3'- gUUGCC--UgUUGUgaCA-----ACAUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 67153 0.73 0.794435
Target:  5'- gCGACGGGCGcaGCACUcGUggccccaUGgaaAGGGGGGa -3'
miRNA:   3'- -GUUGCCUGU--UGUGA-CA-------ACa--UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 66543 0.66 0.989334
Target:  5'- aGGCGGGgGGCGCUGccgaagGUucguGGGGGc -3'
miRNA:   3'- gUUGCCUgUUGUGACaa----CAu---CCCCCc -5'
5153 5' -51.7 NC_001798.1 + 61006 0.73 0.786056
Target:  5'- gGGCGGAUGACGCggaccggaugGggGuUAGGGGGGc -3'
miRNA:   3'- gUUGCCUGUUGUGa---------CaaC-AUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 56174 0.72 0.839386
Target:  5'- cCGGgGGACGGCGggGggGUGGGGuGGGg -3'
miRNA:   3'- -GUUgCCUGUUGUgaCaaCAUCCC-CCC- -5'
5153 5' -51.7 NC_001798.1 + 48722 0.68 0.973144
Target:  5'- ---gGGGCGGCACUGggGUGauacuuaaaugcGGGGuGGu -3'
miRNA:   3'- guugCCUGUUGUGACaaCAU------------CCCC-CC- -5'
5153 5' -51.7 NC_001798.1 + 45968 0.67 0.984542
Target:  5'- --cCGGAauGCGCcguccucguggaUGUUGUcGGGGGGGa -3'
miRNA:   3'- guuGCCUguUGUG------------ACAACA-UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 40449 0.67 0.984542
Target:  5'- -uGCGGA-AGCACgcg-GUAGGGuGGGg -3'
miRNA:   3'- guUGCCUgUUGUGacaaCAUCCC-CCC- -5'
5153 5' -51.7 NC_001798.1 + 39453 0.68 0.974232
Target:  5'- ---gGGACAGCGCcaucagcggAGGGGGGg -3'
miRNA:   3'- guugCCUGUUGUGacaaca---UCCCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.