miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5153 5' -51.7 NC_001798.1 + 9715 0.68 0.97028
Target:  5'- uCGACGGGCucGgGCUGgcGcUGGGGGaGGu -3'
miRNA:   3'- -GUUGCCUGu-UgUGACaaC-AUCCCC-CC- -5'
5153 5' -51.7 NC_001798.1 + 30925 0.68 0.97028
Target:  5'- cCGACGGugAGgGCggcggggGUcgGgcGGGGGGc -3'
miRNA:   3'- -GUUGCCugUUgUGa------CAa-CauCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 26523 0.68 0.967203
Target:  5'- gCGGCGGGCGGCgGCgUGgagGUGGuGGGGa -3'
miRNA:   3'- -GUUGCCUGUUG-UG-ACaa-CAUC-CCCCc -5'
5153 5' -51.7 NC_001798.1 + 10269 0.68 0.967203
Target:  5'- ---gGGAUAACACgaggGUgcGUcGGGGGGg -3'
miRNA:   3'- guugCCUGUUGUGa---CAa-CAuCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 101886 0.68 0.967203
Target:  5'- -uGCGGGgGAgGgCUGaUGUAGcGGGGGa -3'
miRNA:   3'- guUGCCUgUUgU-GACaACAUC-CCCCC- -5'
5153 5' -51.7 NC_001798.1 + 27396 0.69 0.956635
Target:  5'- gAGCGGugGuGCgACUGgcGUcuucGGGGGGGc -3'
miRNA:   3'- gUUGCCugU-UG-UGACaaCA----UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 10301 0.69 0.956635
Target:  5'- gGGgGGACGACGggGggGggguugGGGGGGGa -3'
miRNA:   3'- gUUgCCUGUUGUgaCaaCa-----UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 34623 0.69 0.956635
Target:  5'- gCGGCGG-CGGCGggGggGgGGGGGGGa -3'
miRNA:   3'- -GUUGCCuGUUGUgaCaaCaUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 37209 0.69 0.95265
Target:  5'- aCGACGGGCGcgGCGCcgGagcuUUGgcccAGGGGGGu -3'
miRNA:   3'- -GUUGCCUGU--UGUGa-C----AACa---UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 148386 0.69 0.95265
Target:  5'- gGGCGGGCGugGCgGgcaggUGUGcGGGcGGGg -3'
miRNA:   3'- gUUGCCUGUugUGaCa----ACAU-CCC-CCC- -5'
5153 5' -51.7 NC_001798.1 + 148279 0.69 0.95265
Target:  5'- gGGCGGGCGugGCgGgcaggUGUGcGGGcGGGg -3'
miRNA:   3'- gUUGCCUGUugUGaCa----ACAU-CCC-CCC- -5'
5153 5' -51.7 NC_001798.1 + 5081 0.69 0.943957
Target:  5'- ---gGGGCGGCAgUGg---GGGGGGGu -3'
miRNA:   3'- guugCCUGUUGUgACaacaUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 130205 0.69 0.943957
Target:  5'- gGugGGAC-ACGCUcgcGUAGGGGGu -3'
miRNA:   3'- gUugCCUGuUGUGAcaaCAUCCCCCc -5'
5153 5' -51.7 NC_001798.1 + 122109 0.69 0.943957
Target:  5'- cCGGCGGGgGGCGCU-UUGccagccGGGGGGGc -3'
miRNA:   3'- -GUUGCCUgUUGUGAcAACa-----UCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 36150 0.7 0.929075
Target:  5'- gGGCGcGGCGGCGgUcGggGUGGGGGGa -3'
miRNA:   3'- gUUGC-CUGUUGUgA-CaaCAUCCCCCc -5'
5153 5' -51.7 NC_001798.1 + 15347 0.7 0.917908
Target:  5'- gCGGgGGGCGAgGCgGUg--AGGGGGGa -3'
miRNA:   3'- -GUUgCCUGUUgUGaCAacaUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 31237 0.71 0.892609
Target:  5'- gCAGCGG-CGGCGCcccGUUGcGGGcGGGGg -3'
miRNA:   3'- -GUUGCCuGUUGUGa--CAACaUCC-CCCC- -5'
5153 5' -51.7 NC_001798.1 + 68132 0.71 0.88568
Target:  5'- aGACGGcgAgGGCGgaGUuggugUGUAGGGGGGg -3'
miRNA:   3'- gUUGCC--UgUUGUgaCA-----ACAUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 34064 0.72 0.855678
Target:  5'- --cCGGGCAcGCGCcuuugggGUUGuUGGGGGGGg -3'
miRNA:   3'- guuGCCUGU-UGUGa------CAAC-AUCCCCCC- -5'
5153 5' -51.7 NC_001798.1 + 36837 0.72 0.847634
Target:  5'- gCGugGGGacCGGCugUGUgGUGGGuGGGGg -3'
miRNA:   3'- -GUugCCU--GUUGugACAaCAUCC-CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.