Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 5153 | 5' | -51.7 | NC_001798.1 | + | 56174 | 0.72 | 0.839386 |
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Target: 5'- cCGGgGGACGGCGggGggGUGGGGuGGGg -3' miRNA: 3'- -GUUgCCUGUUGUgaCaaCAUCCC-CCC- -5' |
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| 5153 | 5' | -51.7 | NC_001798.1 | + | 67153 | 0.73 | 0.794435 |
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Target: 5'- gCGACGGGCGcaGCACUcGUggccccaUGgaaAGGGGGGa -3' miRNA: 3'- -GUUGCCUGU--UGUGA-CA-------ACa--UCCCCCC- -5' |
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| 5153 | 5' | -51.7 | NC_001798.1 | + | 61006 | 0.73 | 0.786056 |
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Target: 5'- gGGCGGAUGACGCggaccggaugGggGuUAGGGGGGc -3' miRNA: 3'- gUUGCCUGUUGUGa---------CaaC-AUCCCCCC- -5' |
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| 5153 | 5' | -51.7 | NC_001798.1 | + | 105715 | 0.73 | 0.786056 |
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Target: 5'- aCAGCGGuCGACacccagggGCUGUUGUcGGGuGGGu -3' miRNA: 3'- -GUUGCCuGUUG--------UGACAACAuCCC-CCC- -5' |
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| 5153 | 5' | -51.7 | NC_001798.1 | + | 36091 | 0.74 | 0.767028 |
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Target: 5'- gGugGGugGGCGg-GUgGUGGGGGGGg -3' miRNA: 3'- gUugCCugUUGUgaCAaCAUCCCCCC- -5' |
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| 5153 | 5' | -51.7 | NC_001798.1 | + | 69635 | 0.82 | 0.356981 |
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Target: 5'- cCAACGGGCGA----GUUGUGGGGGGGg -3' miRNA: 3'- -GUUGCCUGUUgugaCAACAUCCCCCC- -5' |
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| 5153 | 5' | -51.7 | NC_001798.1 | + | 119750 | 0.98 | 0.040881 |
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Target: 5'- cCAACGGACAA-ACUGUUGUAGGGGGGg -3' miRNA: 3'- -GUUGCCUGUUgUGACAACAUCCCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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