miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5154 5' -52.3 NC_001798.1 + 141157 0.73 0.758627
Target:  5'- -aCCAGCGAC-CGCuCUCCGgggGAGCGu -3'
miRNA:   3'- caGGUCGUUGaGCG-GAGGCa--UUUGUg -5'
5154 5' -52.3 NC_001798.1 + 138949 0.66 0.978118
Target:  5'- aGUCCAGCAGCgUCGuCCUgagCGUgcaucgccacgugucGAACACc -3'
miRNA:   3'- -CAGGUCGUUG-AGC-GGAg--GCA---------------UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 124197 0.67 0.962084
Target:  5'- -cCCAGCGcaccCUgGCCgUCCGgggGGACGCg -3'
miRNA:   3'- caGGUCGUu---GAgCGG-AGGCa--UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 121117 0.66 0.974556
Target:  5'- uUCCGGCAccgggaaggGCUCGCaccgCCGgccgggccaUGAACGCg -3'
miRNA:   3'- cAGGUCGU---------UGAGCGga--GGC---------AUUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 120710 0.69 0.907917
Target:  5'- cGUCCGGCGAacggCGCCguccaUCGUGAuaaACACg -3'
miRNA:   3'- -CAGGUCGUUga--GCGGa----GGCAUU---UGUG- -5'
5154 5' -52.3 NC_001798.1 + 119129 1.09 0.005673
Target:  5'- cGUCCAGCAACUCGCCUCCGUAAACACc -3'
miRNA:   3'- -CAGGUCGUUGAGCGGAGGCAUUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 114544 0.73 0.755662
Target:  5'- aUCCAGCAGCUCGCgCgcaacguccaggCCGUccugggggcguuuGAGCGCg -3'
miRNA:   3'- cAGGUCGUUGAGCG-Ga-----------GGCA-------------UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 113781 0.73 0.747705
Target:  5'- ---gGGCAGCUCGCCcCCGUGccuguugGGCACa -3'
miRNA:   3'- caggUCGUUGAGCGGaGGCAU-------UUGUG- -5'
5154 5' -52.3 NC_001798.1 + 111545 0.67 0.962084
Target:  5'- cUCCAGCGcccGgUCGCCggCGUaGAACACc -3'
miRNA:   3'- cAGGUCGU---UgAGCGGagGCA-UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 110643 0.68 0.941233
Target:  5'- cGUCCAcGCccaacccaaccGACUC-CCUCCGUGucCGCg -3'
miRNA:   3'- -CAGGU-CG-----------UUGAGcGGAGGCAUuuGUG- -5'
5154 5' -52.3 NC_001798.1 + 110414 0.7 0.887853
Target:  5'- uUCCAGCGACgUGCCgUCCGUGGc--- -3'
miRNA:   3'- cAGGUCGUUGaGCGG-AGGCAUUugug -5'
5154 5' -52.3 NC_001798.1 + 109974 0.67 0.962084
Target:  5'- -aCCcGCGGCgUgGCCUCCGUucuCACg -3'
miRNA:   3'- caGGuCGUUG-AgCGGAGGCAuuuGUG- -5'
5154 5' -52.3 NC_001798.1 + 109431 0.72 0.806251
Target:  5'- -cCCGGCGGCcCGCCUgCGgcuggAGGCGCg -3'
miRNA:   3'- caGGUCGUUGaGCGGAgGCa----UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 99976 0.66 0.97714
Target:  5'- -cCCAGCGccaaCGCgUCCGUgGAGCGCa -3'
miRNA:   3'- caGGUCGUuga-GCGgAGGCA-UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 99880 0.66 0.979526
Target:  5'- -cUCAGCAacacGCUCGCCgagCUGUAcgUGCg -3'
miRNA:   3'- caGGUCGU----UGAGCGGa--GGCAUuuGUG- -5'
5154 5' -52.3 NC_001798.1 + 98609 0.66 0.979526
Target:  5'- -cCCGGCGGCcccccgCGCCUCgGgcGGCGu -3'
miRNA:   3'- caGGUCGUUGa-----GCGGAGgCauUUGUg -5'
5154 5' -52.3 NC_001798.1 + 95900 0.67 0.954476
Target:  5'- -aCgGGCu-CUCGCCUCCuuGUGGugGCg -3'
miRNA:   3'- caGgUCGuuGAGCGGAGG--CAUUugUG- -5'
5154 5' -52.3 NC_001798.1 + 93139 0.69 0.920041
Target:  5'- --gCAGCGcCUgGCCUCgGUGAugGCg -3'
miRNA:   3'- cagGUCGUuGAgCGGAGgCAUUugUG- -5'
5154 5' -52.3 NC_001798.1 + 90680 0.67 0.965536
Target:  5'- -cCCGGCGACUCGCgCagggCCGccgccAGGCGCu -3'
miRNA:   3'- caGGUCGUUGAGCG-Ga---GGCa----UUUGUG- -5'
5154 5' -52.3 NC_001798.1 + 87964 0.66 0.975614
Target:  5'- -aCCAGCAGCUugcggggcuuggacgCGCCUCCcgggggGUcgGCAUg -3'
miRNA:   3'- caGGUCGUUGA---------------GCGGAGG------CAuuUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.