Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5154 | 5' | -52.3 | NC_001798.1 | + | 95900 | 0.67 | 0.954476 |
Target: 5'- -aCgGGCu-CUCGCCUCCuuGUGGugGCg -3' miRNA: 3'- caGgUCGuuGAGCGGAGG--CAUUugUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 98609 | 0.66 | 0.979526 |
Target: 5'- -cCCGGCGGCcccccgCGCCUCgGgcGGCGu -3' miRNA: 3'- caGGUCGUUGa-----GCGGAGgCauUUGUg -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 99880 | 0.66 | 0.979526 |
Target: 5'- -cUCAGCAacacGCUCGCCgagCUGUAcgUGCg -3' miRNA: 3'- caGGUCGU----UGAGCGGa--GGCAUuuGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 99976 | 0.66 | 0.97714 |
Target: 5'- -cCCAGCGccaaCGCgUCCGUgGAGCGCa -3' miRNA: 3'- caGGUCGUuga-GCGgAGGCA-UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 109431 | 0.72 | 0.806251 |
Target: 5'- -cCCGGCGGCcCGCCUgCGgcuggAGGCGCg -3' miRNA: 3'- caGGUCGUUGaGCGGAgGCa----UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 109974 | 0.67 | 0.962084 |
Target: 5'- -aCCcGCGGCgUgGCCUCCGUucuCACg -3' miRNA: 3'- caGGuCGUUG-AgCGGAGGCAuuuGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 110414 | 0.7 | 0.887853 |
Target: 5'- uUCCAGCGACgUGCCgUCCGUGGc--- -3' miRNA: 3'- cAGGUCGUUGaGCGG-AGGCAUUugug -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 110643 | 0.68 | 0.941233 |
Target: 5'- cGUCCAcGCccaacccaaccGACUC-CCUCCGUGucCGCg -3' miRNA: 3'- -CAGGU-CG-----------UUGAGcGGAGGCAUuuGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 111545 | 0.67 | 0.962084 |
Target: 5'- cUCCAGCGcccGgUCGCCggCGUaGAACACc -3' miRNA: 3'- cAGGUCGU---UgAGCGGagGCA-UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 113781 | 0.73 | 0.747705 |
Target: 5'- ---gGGCAGCUCGCCcCCGUGccuguugGGCACa -3' miRNA: 3'- caggUCGUUGAGCGGaGGCAU-------UUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 114544 | 0.73 | 0.755662 |
Target: 5'- aUCCAGCAGCUCGCgCgcaacguccaggCCGUccugggggcguuuGAGCGCg -3' miRNA: 3'- cAGGUCGUUGAGCG-Ga-----------GGCA-------------UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 119129 | 1.09 | 0.005673 |
Target: 5'- cGUCCAGCAACUCGCCUCCGUAAACACc -3' miRNA: 3'- -CAGGUCGUUGAGCGGAGGCAUUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 120710 | 0.69 | 0.907917 |
Target: 5'- cGUCCGGCGAacggCGCCguccaUCGUGAuaaACACg -3' miRNA: 3'- -CAGGUCGUUga--GCGGa----GGCAUU---UGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 121117 | 0.66 | 0.974556 |
Target: 5'- uUCCGGCAccgggaaggGCUCGCaccgCCGgccgggccaUGAACGCg -3' miRNA: 3'- cAGGUCGU---------UGAGCGga--GGC---------AUUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 124197 | 0.67 | 0.962084 |
Target: 5'- -cCCAGCGcaccCUgGCCgUCCGgggGGACGCg -3' miRNA: 3'- caGGUCGUu---GAgCGG-AGGCa--UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 138949 | 0.66 | 0.978118 |
Target: 5'- aGUCCAGCAGCgUCGuCCUgagCGUgcaucgccacgugucGAACACc -3' miRNA: 3'- -CAGGUCGUUG-AGC-GGAg--GCA---------------UUUGUG- -5' |
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5154 | 5' | -52.3 | NC_001798.1 | + | 141157 | 0.73 | 0.758627 |
Target: 5'- -aCCAGCGAC-CGCuCUCCGgggGAGCGu -3' miRNA: 3'- caGGUCGUUGaGCG-GAGGCa--UUUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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