miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5155 5' -56.3 NC_001798.1 + 112842 0.66 0.919302
Target:  5'- uGGGugUGAaUUUCg---GGGGUUCCg -3'
miRNA:   3'- cCCCugACUaAGAGuggaCCCCGAGG- -5'
5155 5' -56.3 NC_001798.1 + 151592 0.66 0.913591
Target:  5'- uGGGGCUGcccuggcgCUCgGCCgGGGGCcgggCCg -3'
miRNA:   3'- cCCCUGACuaa-----GAG-UGGaCCCCGa---GG- -5'
5155 5' -56.3 NC_001798.1 + 80673 0.66 0.913591
Target:  5'- -uGGAcCUGGUUCUgGCCgcGGuGCUCCu -3'
miRNA:   3'- ccCCU-GACUAAGAgUGGa-CCcCGAGG- -5'
5155 5' -56.3 NC_001798.1 + 15198 0.66 0.913591
Target:  5'- gGGGGGCUGGcga--GCCgggGGGaGCgUCCg -3'
miRNA:   3'- -CCCCUGACUaagagUGGa--CCC-CG-AGG- -5'
5155 5' -56.3 NC_001798.1 + 52091 0.66 0.901474
Target:  5'- cGGGGcGCaUGAcguacaUCGCCaccGGGGCUCUg -3'
miRNA:   3'- -CCCC-UG-ACUaag---AGUGGa--CCCCGAGG- -5'
5155 5' -56.3 NC_001798.1 + 150597 0.66 0.900844
Target:  5'- cGGGGgagagucGCUGAUgacUAUggGGGGCUCCu -3'
miRNA:   3'- -CCCC-------UGACUAagaGUGgaCCCCGAGG- -5'
5155 5' -56.3 NC_001798.1 + 100844 0.66 0.895072
Target:  5'- cGGGGCg----CUUGCCgUGGGGCUgCu -3'
miRNA:   3'- cCCCUGacuaaGAGUGG-ACCCCGAgG- -5'
5155 5' -56.3 NC_001798.1 + 104573 0.66 0.888445
Target:  5'- cGGGuGCUGGUgUCUCggggaacgucGCCcGGGGCcgCCg -3'
miRNA:   3'- -CCCcUGACUA-AGAG----------UGGaCCCCGa-GG- -5'
5155 5' -56.3 NC_001798.1 + 67569 0.67 0.878796
Target:  5'- gGGGGGCgaccucgggCUC-CC-GGGGUUCCu -3'
miRNA:   3'- -CCCCUGacuaa----GAGuGGaCCCCGAGG- -5'
5155 5' -56.3 NC_001798.1 + 102783 0.67 0.867252
Target:  5'- gGGGGAUgug-UCauggCACCcGGGGCgCCg -3'
miRNA:   3'- -CCCCUGacuaAGa---GUGGaCCCCGaGG- -5'
5155 5' -56.3 NC_001798.1 + 144585 0.67 0.867252
Target:  5'- cGGGcGGCUGGg--UgGCgaGGGGCUUCg -3'
miRNA:   3'- -CCC-CUGACUaagAgUGgaCCCCGAGG- -5'
5155 5' -56.3 NC_001798.1 + 31062 0.67 0.859766
Target:  5'- cGGGGGuCgGGcaCUaACCgGGGGCUCCc -3'
miRNA:   3'- -CCCCU-GaCUaaGAgUGGaCCCCGAGG- -5'
5155 5' -56.3 NC_001798.1 + 66697 0.67 0.852079
Target:  5'- gGGGGACUGggUa--GCC-GGGG-UCCg -3'
miRNA:   3'- -CCCCUGACuaAgagUGGaCCCCgAGG- -5'
5155 5' -56.3 NC_001798.1 + 109253 0.68 0.844197
Target:  5'- cGGGGCUG---CUCGCCUcgucGGGGUUUg -3'
miRNA:   3'- cCCCUGACuaaGAGUGGA----CCCCGAGg -5'
5155 5' -56.3 NC_001798.1 + 98540 0.68 0.819446
Target:  5'- gGGGGGCuUGAUUUgcgCGCUggucgugGGGGCgcugguggCCg -3'
miRNA:   3'- -CCCCUG-ACUAAGa--GUGGa------CCCCGa-------GG- -5'
5155 5' -56.3 NC_001798.1 + 86456 0.68 0.819446
Target:  5'- cGGGGGCcGGUUCgugaGCCUGcuucgggccgcGGGCcCCg -3'
miRNA:   3'- -CCCCUGaCUAAGag--UGGAC-----------CCCGaGG- -5'
5155 5' -56.3 NC_001798.1 + 116522 0.68 0.810852
Target:  5'- cGGGGGCgcug-CUgCACCgcGGGGgUCCg -3'
miRNA:   3'- -CCCCUGacuaaGA-GUGGa-CCCCgAGG- -5'
5155 5' -56.3 NC_001798.1 + 67195 0.68 0.802099
Target:  5'- aGGGGGCgggGGgaca-GCCUGGGG-UCCu -3'
miRNA:   3'- -CCCCUGa--CUaagagUGGACCCCgAGG- -5'
5155 5' -56.3 NC_001798.1 + 47317 0.69 0.774969
Target:  5'- cGGGGAUUGGUUagucccgUCGCCUGcGGUuauaUCCa -3'
miRNA:   3'- -CCCCUGACUAAg------AGUGGACcCCG----AGG- -5'
5155 5' -56.3 NC_001798.1 + 141460 0.69 0.765664
Target:  5'- cGGGGcugcgagcuGCUGAccggCUCGCCgcgcggGGGGCugaugUCCg -3'
miRNA:   3'- -CCCC---------UGACUaa--GAGUGGa-----CCCCG-----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.