miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 97854 0.69 0.980578
Target:  5'- cGGgCACGGuCAUCGACaACcg-CGCc -3'
miRNA:   3'- aCCgGUGCCuGUAGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 98577 0.7 0.952015
Target:  5'- gUGGCCGCGGugGCGUCGGCgGCcccgGCg -3'
miRNA:   3'- -ACCGGUGCC--UGUAGUUGaUGaaagCG- -5'
5156 5' -49.9 NC_001798.1 + 98792 0.68 0.989492
Target:  5'- cGGCCACGc----CAGCUGCgcgCGCa -3'
miRNA:   3'- aCCGGUGCcuguaGUUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 100294 0.7 0.966957
Target:  5'- cGGCCGgGGACGU--GCUACagcCGCc -3'
miRNA:   3'- aCCGGUgCCUGUAguUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 102742 0.67 0.994834
Target:  5'- -cGCgCACGGACggCGAcCUGCgg-CGCg -3'
miRNA:   3'- acCG-GUGCCUGuaGUU-GAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 103851 0.66 0.996226
Target:  5'- aGGCCACGGACAgguACUGg------ -3'
miRNA:   3'- aCCGGUGCCUGUaguUGAUgaaagcg -5'
5156 5' -49.9 NC_001798.1 + 104729 0.67 0.993051
Target:  5'- cGGUacuGCGGGCGUCcGCU-CUcgUCGCc -3'
miRNA:   3'- aCCGg--UGCCUGUAGuUGAuGAa-AGCG- -5'
5156 5' -49.9 NC_001798.1 + 105612 0.69 0.970108
Target:  5'- gGGCgGCGGGCGggCGACgACgg-CGCu -3'
miRNA:   3'- aCCGgUGCCUGUa-GUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 106175 0.68 0.982703
Target:  5'- cGGCCGCGGugAUguugcCGGagauCUUUUGCg -3'
miRNA:   3'- aCCGGUGCCugUA-----GUUgau-GAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 110320 0.68 0.986251
Target:  5'- cGGCCGgGGAgGUCAugucgguGCUGCUggUGg -3'
miRNA:   3'- aCCGGUgCCUgUAGU-------UGAUGAaaGCg -5'
5156 5' -49.9 NC_001798.1 + 111815 0.76 0.730451
Target:  5'- cGGUCGCGGGCGUCcAGggGCUggCGCg -3'
miRNA:   3'- aCCGGUGCCUGUAG-UUgaUGAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 113319 0.74 0.835189
Target:  5'- gUGGCCGCGGGCAUguAUUACgggUGg -3'
miRNA:   3'- -ACCGGUGCCUGUAguUGAUGaaaGCg -5'
5156 5' -49.9 NC_001798.1 + 113658 0.66 0.996797
Target:  5'- gUGGCgGCGG-CG--GACUGCUUUgcCGCc -3'
miRNA:   3'- -ACCGgUGCCuGUagUUGAUGAAA--GCG- -5'
5156 5' -49.9 NC_001798.1 + 114497 0.7 0.959965
Target:  5'- aGGCCcuggacgggACGGGCAUUAGcCUGCa-UCGCc -3'
miRNA:   3'- aCCGG---------UGCCUGUAGUU-GAUGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 117631 1.12 0.007314
Target:  5'- gUGGCCACGGACAUCAACUACUUUCGCc -3'
miRNA:   3'- -ACCGGUGCCUGUAGUUGAUGAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 118927 0.68 0.989492
Target:  5'- aGGCgACGGACGUgCGcCUGgagUCGCu -3'
miRNA:   3'- aCCGgUGCCUGUA-GUuGAUgaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 120285 0.74 0.843695
Target:  5'- aUGGCCACGGccgaGUCcuGGCUGCUgUUGCc -3'
miRNA:   3'- -ACCGGUGCCug--UAG--UUGAUGAaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 122145 0.71 0.933104
Target:  5'- gGGCCGCGGGCGaggacguccUCAACgACg--UGCu -3'
miRNA:   3'- aCCGGUGCCUGU---------AGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 122475 0.67 0.993996
Target:  5'- cGGCC-CaGACGgc-GCUGCUgcgUCGCu -3'
miRNA:   3'- aCCGGuGcCUGUaguUGAUGAa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 128586 0.72 0.903667
Target:  5'- gGGCCgcgcggacGCGGGCGUCAACgACga-CGCc -3'
miRNA:   3'- aCCGG--------UGCCUGUAGUUGaUGaaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.