miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 73971 0.68 0.982703
Target:  5'- cGGCCGCGGGC-UCcgGGCcGCcg-CGCa -3'
miRNA:   3'- aCCGGUGCCUGuAG--UUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 76195 0.67 0.991992
Target:  5'- cGGCCGCGGuCGUgcccauggucCAGUUGCUggaaUCGCu -3'
miRNA:   3'- aCCGGUGCCuGUA----------GUUGAUGAa---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 77721 0.68 0.984647
Target:  5'- gGGCCGCcGGCGUCGAg-GCgg-CGCu -3'
miRNA:   3'- aCCGGUGcCUGUAGUUgaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 79253 0.68 0.988032
Target:  5'- gGGCCugcugGCGGAguUCGACgcgGCggcCGCg -3'
miRNA:   3'- aCCGG-----UGCCUguAGUUGa--UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 79475 0.7 0.956113
Target:  5'- gGGCCACGaggucGACccgCAGCUGCUgcgcCGCc -3'
miRNA:   3'- aCCGGUGC-----CUGua-GUUGAUGAaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 79605 0.68 0.989492
Target:  5'- uUGGCCcCGGACGgaacgCcGCUGCagUaCGCg -3'
miRNA:   3'- -ACCGGuGCCUGUa----GuUGAUGaaA-GCG- -5'
5156 5' -49.9 NC_001798.1 + 79744 0.68 0.982703
Target:  5'- cGGUCACGGcCAUguACgUGCUgaccgUCGUg -3'
miRNA:   3'- aCCGGUGCCuGUAguUG-AUGAa----AGCG- -5'
5156 5' -49.9 NC_001798.1 + 80684 0.66 0.997726
Target:  5'- cUGGCCGCGGuGCuccUCGGC-GCgcccgUCGUg -3'
miRNA:   3'- -ACCGGUGCC-UGu--AGUUGaUGaa---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 81538 0.76 0.750725
Target:  5'- cGGCCcauCGGGCcggCAGCUACggcUCGCg -3'
miRNA:   3'- aCCGGu--GCCUGua-GUUGAUGaa-AGCG- -5'
5156 5' -49.9 NC_001798.1 + 83348 0.68 0.982499
Target:  5'- cGGCCGCGG-CGUCGcccgcgaacauagGCUGCggg-GCg -3'
miRNA:   3'- aCCGGUGCCuGUAGU-------------UGAUGaaagCG- -5'
5156 5' -49.9 NC_001798.1 + 83661 0.66 0.997726
Target:  5'- cGGCuCGCGGGCGUCugggauGC-ACUggCGg -3'
miRNA:   3'- aCCG-GUGCCUGUAGu-----UGaUGAaaGCg -5'
5156 5' -49.9 NC_001798.1 + 83967 0.68 0.989492
Target:  5'- cGGCgACGGGCGagGGcCUGCUcggcggCGCg -3'
miRNA:   3'- aCCGgUGCCUGUagUU-GAUGAaa----GCG- -5'
5156 5' -49.9 NC_001798.1 + 84947 0.68 0.989492
Target:  5'- gGGUCugGGACcgCAGCg-----CGCa -3'
miRNA:   3'- aCCGGugCCUGuaGUUGaugaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 85365 0.7 0.966957
Target:  5'- -cGCCGCGGcgucCGUCGAC-ACcUUCGCg -3'
miRNA:   3'- acCGGUGCCu---GUAGUUGaUGaAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 86855 0.66 0.997726
Target:  5'- cGGCCGC-GACAagaccCGGCgGCggUCGCg -3'
miRNA:   3'- aCCGGUGcCUGUa----GUUGaUGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 92272 0.67 0.995141
Target:  5'- aUGGCCGCGccUGUCcggccgaaggccuggAGCUGCUgUCGCu -3'
miRNA:   3'- -ACCGGUGCcuGUAG---------------UUGAUGAaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 92330 0.67 0.991992
Target:  5'- cGGCgaCGCGGACGUCGcCg----UCGCg -3'
miRNA:   3'- aCCG--GUGCCUGUAGUuGaugaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 92400 0.67 0.994834
Target:  5'- gUGGCCGCGGuCGUCGGgU-Cc--CGCa -3'
miRNA:   3'- -ACCGGUGCCuGUAGUUgAuGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 97251 0.68 0.989492
Target:  5'- gGGCgGCGGGCGg-AGC-ACUUcgaUCGCg -3'
miRNA:   3'- aCCGgUGCCUGUagUUGaUGAA---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 97643 0.67 0.993996
Target:  5'- -cGCCGCGGACGUgcgggagcgcCGGCgGCUguaCGCg -3'
miRNA:   3'- acCGGUGCCUGUA----------GUUGaUGAaa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.