Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5156 | 5' | -49.9 | NC_001798.1 | + | 25703 | 0.66 | 0.997726 |
Target: 5'- cGGCCGCcuGGGCGggCAACUggACcggCGCc -3' miRNA: 3'- aCCGGUG--CCUGUa-GUUGA--UGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 25752 | 0.66 | 0.997726 |
Target: 5'- gGGCgCGCaGGGCGUgCuGCUGCUguccaCGCg -3' miRNA: 3'- aCCG-GUG-CCUGUA-GuUGAUGAaa---GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 34309 | 0.66 | 0.997726 |
Target: 5'- uUGGCuCGCGGGCGgugCGGCUGaccugccugccCUUUCu- -3' miRNA: 3'- -ACCG-GUGCCUGUa--GUUGAU-----------GAAAGcg -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 80684 | 0.66 | 0.997726 |
Target: 5'- cUGGCCGCGGuGCuccUCGGC-GCgcccgUCGUg -3' miRNA: 3'- -ACCGGUGCC-UGu--AGUUGaUGaa---AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 83661 | 0.66 | 0.997726 |
Target: 5'- cGGCuCGCGGGCGUCugggauGC-ACUggCGg -3' miRNA: 3'- aCCG-GUGCCUGUAGu-----UGaUGAaaGCg -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 103851 | 0.66 | 0.996226 |
Target: 5'- aGGCCACGGACAgguACUGg------ -3' miRNA: 3'- aCCGGUGCCUGUaguUGAUgaaagcg -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 71969 | 0.66 | 0.996226 |
Target: 5'- cUGGCCcUGGugGUCGGggACg--CGCu -3' miRNA: 3'- -ACCGGuGCCugUAGUUgaUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 97643 | 0.67 | 0.993996 |
Target: 5'- -cGCCGCGGACGUgcgggagcgcCGGCgGCUguaCGCg -3' miRNA: 3'- acCGGUGCCUGUA----------GUUGaUGAaa-GCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 28594 | 0.67 | 0.994834 |
Target: 5'- gUGGCCugGGAgA-CGGCcGCg--CGCc -3' miRNA: 3'- -ACCGGugCCUgUaGUUGaUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 39823 | 0.67 | 0.994834 |
Target: 5'- gGGUgGCGGAuCGUCGGCUccccGCcg-CGCu -3' miRNA: 3'- aCCGgUGCCU-GUAGUUGA----UGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 43037 | 0.67 | 0.994834 |
Target: 5'- gGGCCcCGGGCG-CAAaUGCgg-CGCg -3' miRNA: 3'- aCCGGuGCCUGUaGUUgAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 92400 | 0.67 | 0.994834 |
Target: 5'- gUGGCCGCGGuCGUCGGgU-Cc--CGCa -3' miRNA: 3'- -ACCGGUGCCuGUAGUUgAuGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 102742 | 0.67 | 0.994834 |
Target: 5'- -cGCgCACGGACggCGAcCUGCgg-CGCg -3' miRNA: 3'- acCG-GUGCCUGuaGUU-GAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 92272 | 0.67 | 0.995141 |
Target: 5'- aUGGCCGCGccUGUCcggccgaaggccuggAGCUGCUgUCGCu -3' miRNA: 3'- -ACCGGUGCcuGUAG---------------UUGAUGAaAGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 136587 | 0.66 | 0.995362 |
Target: 5'- aGGCCACacaguccgugcgggGGACGggcccgggCAACUGCaa-CGCa -3' miRNA: 3'- aCCGGUG--------------CCUGUa-------GUUGAUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 2569 | 0.66 | 0.995574 |
Target: 5'- cGGCCGCGGggcgggggGCGUCcGCgcgGCUcuucUUCGg -3' miRNA: 3'- aCCGGUGCC--------UGUAGuUGa--UGA----AAGCg -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 132296 | 0.66 | 0.995574 |
Target: 5'- cGGCaguuUACGGACcgCGuGCUGCUgcuccacUCGCu -3' miRNA: 3'- aCCG----GUGCCUGuaGU-UGAUGAa------AGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 43264 | 0.66 | 0.995574 |
Target: 5'- -cGCCGgGGGCGUCGugcccuGCUGCUccgUgGCg -3' miRNA: 3'- acCGGUgCCUGUAGU------UGAUGAa--AgCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 48337 | 0.66 | 0.996226 |
Target: 5'- cGGCgCA-GGACGUCGAC-GCgacCGCg -3' miRNA: 3'- aCCG-GUgCCUGUAGUUGaUGaaaGCG- -5' |
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5156 | 5' | -49.9 | NC_001798.1 | + | 26376 | 0.66 | 0.996226 |
Target: 5'- gGGCCGCGG-CGggaguuCUGCg--CGCg -3' miRNA: 3'- aCCGGUGCCuGUaguu--GAUGaaaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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