miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 42829 0.68 0.984647
Target:  5'- gGGCCGCGGGaaaCAACaGCUgaacCGCc -3'
miRNA:   3'- aCCGGUGCCUguaGUUGaUGAaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 43037 0.67 0.994834
Target:  5'- gGGCCcCGGGCG-CAAaUGCgg-CGCg -3'
miRNA:   3'- aCCGGuGCCUGUaGUUgAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 43264 0.66 0.995574
Target:  5'- -cGCCGgGGGCGUCGugcccuGCUGCUccgUgGCg -3'
miRNA:   3'- acCGGUgCCUGUAGU------UGAUGAa--AgCG- -5'
5156 5' -49.9 NC_001798.1 + 44326 0.66 0.997603
Target:  5'- aUGGCCACGGugAgagccaugaugaugUUAGCguggagCGCa -3'
miRNA:   3'- -ACCGGUGCCugU--------------AGUUGaugaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 45007 0.77 0.678333
Target:  5'- aGGCCcugGCGGugGUCAAUgcGCUUUUGCc -3'
miRNA:   3'- aCCGG---UGCCugUAGUUGa-UGAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 45277 0.76 0.74064
Target:  5'- gGGCCGCGGACAagUCGGCggACgugcUCGUc -3'
miRNA:   3'- aCCGGUGCCUGU--AGUUGa-UGaa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 48337 0.66 0.996226
Target:  5'- cGGCgCA-GGACGUCGAC-GCgacCGCg -3'
miRNA:   3'- aCCG-GUgCCUGUAGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 49377 0.68 0.988032
Target:  5'- aGGCCAUGGcGCAguuuuuccgcggUgAGCUGCgggCGCg -3'
miRNA:   3'- aCCGGUGCC-UGU------------AgUUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 50373 0.69 0.970108
Target:  5'- -uGCCAUGGGCAUUGACgACUUUgGg -3'
miRNA:   3'- acCGGUGCCUGUAGUUGaUGAAAgCg -5'
5156 5' -49.9 NC_001798.1 + 53245 0.71 0.94307
Target:  5'- cGGCCGUGGGCGUC--CUGCggcagCGCg -3'
miRNA:   3'- aCCGGUGCCUGUAGuuGAUGaaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 54806 0.68 0.989492
Target:  5'- aUGcCCGCGGGCGUCGG--GCUUggCGCc -3'
miRNA:   3'- -ACcGGUGCCUGUAGUUgaUGAAa-GCG- -5'
5156 5' -49.9 NC_001798.1 + 62539 0.69 0.978265
Target:  5'- gGGUCGCGGaACAccgCGGCUAUg-UCGCc -3'
miRNA:   3'- aCCGGUGCC-UGUa--GUUGAUGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 64863 0.66 0.997294
Target:  5'- cGGCC-CGGACAU--GCUGCgcuuaaagUgGCu -3'
miRNA:   3'- aCCGGuGCCUGUAguUGAUGaa------AgCG- -5'
5156 5' -49.9 NC_001798.1 + 66226 0.68 0.988032
Target:  5'- gGGCCA-GGAuCAUUAGCUggGCcucgugUUCGCg -3'
miRNA:   3'- aCCGGUgCCU-GUAGUUGA--UGa-----AAGCG- -5'
5156 5' -49.9 NC_001798.1 + 66781 0.75 0.808505
Target:  5'- gGGCCGCGGAaucggaGUCGGCcgACgcgCGCg -3'
miRNA:   3'- aCCGGUGCCUg-----UAGUUGa-UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 66894 0.66 0.997294
Target:  5'- aGGCCACGGGgG-CGGg-GCcgUCGCu -3'
miRNA:   3'- aCCGGUGCCUgUaGUUgaUGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 68990 0.67 0.993051
Target:  5'- gGGCC-CGGACcgccUCGGCgGCg-UCGCg -3'
miRNA:   3'- aCCGGuGCCUGu---AGUUGaUGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 71435 0.72 0.924387
Target:  5'- cGGCCACGGGC-UCAGCgagauccaGCa -3'
miRNA:   3'- aCCGGUGCCUGuAGUUGaugaaag-CG- -5'
5156 5' -49.9 NC_001798.1 + 71603 0.67 0.993996
Target:  5'- cGGCCuguCGGGCGgcguccUCAGCcagacGCUggCGCg -3'
miRNA:   3'- aCCGGu--GCCUGU------AGUUGa----UGAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 71969 0.66 0.996226
Target:  5'- cUGGCCcUGGugGUCGGggACg--CGCu -3'
miRNA:   3'- -ACCGGuGCCugUAGUUgaUGaaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.