miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 24167 0.71 0.947669
Target:  5'- aUGGCgGCGGGCcgcuUCGGCUGgggcCUggCGCa -3'
miRNA:   3'- -ACCGgUGCCUGu---AGUUGAU----GAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 98577 0.7 0.952015
Target:  5'- gUGGCCGCGGugGCGUCGGCgGCcccgGCg -3'
miRNA:   3'- -ACCGGUGCC--UGUAGUUGaUGaaagCG- -5'
5156 5' -49.9 NC_001798.1 + 79475 0.7 0.956113
Target:  5'- gGGCCACGaggucGACccgCAGCUGCUgcgcCGCc -3'
miRNA:   3'- aCCGGUGC-----CUGua-GUUGAUGAaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 114497 0.7 0.959965
Target:  5'- aGGCCcuggacgggACGGGCAUUAGcCUGCa-UCGCc -3'
miRNA:   3'- aCCGG---------UGCCUGUAGUU-GAUGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 100294 0.7 0.966957
Target:  5'- cGGCCGgGGACGU--GCUACagcCGCc -3'
miRNA:   3'- aCCGGUgCCUGUAguUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 85365 0.7 0.966957
Target:  5'- -cGCCGCGGcgucCGUCGAC-ACcUUCGCg -3'
miRNA:   3'- acCGGUGCCu---GUAGUUGaUGaAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 4465 0.7 0.966957
Target:  5'- cGGaCCGCGGACGUCGuCUcCggUcCGCg -3'
miRNA:   3'- aCC-GGUGCCUGUAGUuGAuGaaA-GCG- -5'
5156 5' -49.9 NC_001798.1 + 50373 0.69 0.970108
Target:  5'- -uGCCAUGGGCAUUGACgACUUUgGg -3'
miRNA:   3'- acCGGUGCCUGUAGUUGaUGAAAgCg -5'
5156 5' -49.9 NC_001798.1 + 105612 0.69 0.970108
Target:  5'- gGGCgGCGGGCGggCGACgACgg-CGCu -3'
miRNA:   3'- aCCGgUGCCUGUa-GUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 146557 0.69 0.973038
Target:  5'- gUGGCCGCGGGC--CAGCagACgggcCGCg -3'
miRNA:   3'- -ACCGGUGCCUGuaGUUGa-UGaaa-GCG- -5'
5156 5' -49.9 NC_001798.1 + 32038 0.69 0.975754
Target:  5'- cGGCCACGGGCcgCucGCcccgGCgucCGCg -3'
miRNA:   3'- aCCGGUGCCUGuaGu-UGa---UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 144311 0.69 0.978265
Target:  5'- gGGgCACGGAaGUCGGCagggGCggcgUCGCa -3'
miRNA:   3'- aCCgGUGCCUgUAGUUGa---UGaa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 62539 0.69 0.978265
Target:  5'- gGGUCGCGGaACAccgCGGCUAUg-UCGCc -3'
miRNA:   3'- aCCGGUGCC-UGUa--GUUGAUGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 97854 0.69 0.980578
Target:  5'- cGGgCACGGuCAUCGACaACcg-CGCc -3'
miRNA:   3'- aCCgGUGCCuGUAGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 83348 0.68 0.982499
Target:  5'- cGGCCGCGG-CGUCGcccgcgaacauagGCUGCggg-GCg -3'
miRNA:   3'- aCCGGUGCCuGUAGU-------------UGAUGaaagCG- -5'
5156 5' -49.9 NC_001798.1 + 79744 0.68 0.982703
Target:  5'- cGGUCACGGcCAUguACgUGCUgaccgUCGUg -3'
miRNA:   3'- aCCGGUGCCuGUAguUG-AUGAa----AGCG- -5'
5156 5' -49.9 NC_001798.1 + 106175 0.68 0.982703
Target:  5'- cGGCCGCGGugAUguugcCGGagauCUUUUGCg -3'
miRNA:   3'- aCCGGUGCCugUA-----GUUgau-GAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 73971 0.68 0.982703
Target:  5'- cGGCCGCGGGC-UCcgGGCcGCcg-CGCa -3'
miRNA:   3'- aCCGGUGCCUGuAG--UUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 77721 0.68 0.984647
Target:  5'- gGGCCGCcGGCGUCGAg-GCgg-CGCu -3'
miRNA:   3'- aCCGGUGcCUGUAGUUgaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 42829 0.68 0.984647
Target:  5'- gGGCCGCGGGaaaCAACaGCUgaacCGCc -3'
miRNA:   3'- aCCGGUGCCUguaGUUGaUGAaa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.