miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 114497 0.7 0.959965
Target:  5'- aGGCCcuggacgggACGGGCAUUAGcCUGCa-UCGCc -3'
miRNA:   3'- aCCGG---------UGCCUGUAGUU-GAUGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 113658 0.66 0.996797
Target:  5'- gUGGCgGCGG-CG--GACUGCUUUgcCGCc -3'
miRNA:   3'- -ACCGgUGCCuGUagUUGAUGAAA--GCG- -5'
5156 5' -49.9 NC_001798.1 + 113319 0.74 0.835189
Target:  5'- gUGGCCGCGGGCAUguAUUACgggUGg -3'
miRNA:   3'- -ACCGGUGCCUGUAguUGAUGaaaGCg -5'
5156 5' -49.9 NC_001798.1 + 111815 0.76 0.730451
Target:  5'- cGGUCGCGGGCGUCcAGggGCUggCGCg -3'
miRNA:   3'- aCCGGUGCCUGUAG-UUgaUGAaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 110320 0.68 0.986251
Target:  5'- cGGCCGgGGAgGUCAugucgguGCUGCUggUGg -3'
miRNA:   3'- aCCGGUgCCUgUAGU-------UGAUGAaaGCg -5'
5156 5' -49.9 NC_001798.1 + 106175 0.68 0.982703
Target:  5'- cGGCCGCGGugAUguugcCGGagauCUUUUGCg -3'
miRNA:   3'- aCCGGUGCCugUA-----GUUgau-GAAAGCG- -5'
5156 5' -49.9 NC_001798.1 + 105612 0.69 0.970108
Target:  5'- gGGCgGCGGGCGggCGACgACgg-CGCu -3'
miRNA:   3'- aCCGgUGCCUGUa-GUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 104729 0.67 0.993051
Target:  5'- cGGUacuGCGGGCGUCcGCU-CUcgUCGCc -3'
miRNA:   3'- aCCGg--UGCCUGUAGuUGAuGAa-AGCG- -5'
5156 5' -49.9 NC_001798.1 + 103851 0.66 0.996226
Target:  5'- aGGCCACGGACAgguACUGg------ -3'
miRNA:   3'- aCCGGUGCCUGUaguUGAUgaaagcg -5'
5156 5' -49.9 NC_001798.1 + 102742 0.67 0.994834
Target:  5'- -cGCgCACGGACggCGAcCUGCgg-CGCg -3'
miRNA:   3'- acCG-GUGCCUGuaGUU-GAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 100294 0.7 0.966957
Target:  5'- cGGCCGgGGACGU--GCUACagcCGCc -3'
miRNA:   3'- aCCGGUgCCUGUAguUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 98792 0.68 0.989492
Target:  5'- cGGCCACGc----CAGCUGCgcgCGCa -3'
miRNA:   3'- aCCGGUGCcuguaGUUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 98577 0.7 0.952015
Target:  5'- gUGGCCGCGGugGCGUCGGCgGCcccgGCg -3'
miRNA:   3'- -ACCGGUGCC--UGUAGUUGaUGaaagCG- -5'
5156 5' -49.9 NC_001798.1 + 97854 0.69 0.980578
Target:  5'- cGGgCACGGuCAUCGACaACcg-CGCc -3'
miRNA:   3'- aCCgGUGCCuGUAGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 97643 0.67 0.993996
Target:  5'- -cGCCGCGGACGUgcgggagcgcCGGCgGCUguaCGCg -3'
miRNA:   3'- acCGGUGCCUGUA----------GUUGaUGAaa-GCG- -5'
5156 5' -49.9 NC_001798.1 + 97251 0.68 0.989492
Target:  5'- gGGCgGCGGGCGg-AGC-ACUUcgaUCGCg -3'
miRNA:   3'- aCCGgUGCCUGUagUUGaUGAA---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 92400 0.67 0.994834
Target:  5'- gUGGCCGCGGuCGUCGGgU-Cc--CGCa -3'
miRNA:   3'- -ACCGGUGCCuGUAGUUgAuGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 92330 0.67 0.991992
Target:  5'- cGGCgaCGCGGACGUCGcCg----UCGCg -3'
miRNA:   3'- aCCG--GUGCCUGUAGUuGaugaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 92272 0.67 0.995141
Target:  5'- aUGGCCGCGccUGUCcggccgaaggccuggAGCUGCUgUCGCu -3'
miRNA:   3'- -ACCGGUGCcuGUAG---------------UUGAUGAaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 86855 0.66 0.997726
Target:  5'- cGGCCGC-GACAagaccCGGCgGCggUCGCg -3'
miRNA:   3'- aCCGGUGcCUGUa----GUUGaUGaaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.