miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5156 5' -49.9 NC_001798.1 + 149954 0.67 0.993996
Target:  5'- cGGCCugGGACGacggaGACgccgACgggggCGCg -3'
miRNA:   3'- aCCGGugCCUGUag---UUGa---UGaaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 146557 0.69 0.973038
Target:  5'- gUGGCCGCGGGC--CAGCagACgggcCGCg -3'
miRNA:   3'- -ACCGGUGCCUGuaGUUGa-UGaaa-GCG- -5'
5156 5' -49.9 NC_001798.1 + 144596 0.74 0.826483
Target:  5'- gUGGCgAgGGGCuUCGACUGCgagcUCGCu -3'
miRNA:   3'- -ACCGgUgCCUGuAGUUGAUGaa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 144311 0.69 0.978265
Target:  5'- gGGgCACGGAaGUCGGCagggGCggcgUCGCa -3'
miRNA:   3'- aCCgGUGCCUgUAGUUGa---UGaa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 141726 0.73 0.875561
Target:  5'- cUGGCCAUGGcCAUCAACgccgACUacgGCa -3'
miRNA:   3'- -ACCGGUGCCuGUAGUUGa---UGAaagCG- -5'
5156 5' -49.9 NC_001798.1 + 139065 0.66 0.997294
Target:  5'- aGGCCGCGGGCcaccACgugGCgg-CGCc -3'
miRNA:   3'- aCCGGUGCCUGuaguUGa--UGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 138115 0.68 0.990035
Target:  5'- uUGaCCACGGcCGUCugaaacgccuggcgaAGCUGCUgcggUCGCg -3'
miRNA:   3'- -ACcGGUGCCuGUAG---------------UUGAUGAa---AGCG- -5'
5156 5' -49.9 NC_001798.1 + 137985 0.66 0.996797
Target:  5'- -cGCCugGGcgcGCcgCAGCUcGCggUCGCg -3'
miRNA:   3'- acCGGugCC---UGuaGUUGA-UGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 137176 0.68 0.986421
Target:  5'- cUGGUCGCGGuaaACcgCGGCUgGCgaUCGCu -3'
miRNA:   3'- -ACCGGUGCC---UGuaGUUGA-UGaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 136701 0.68 0.989492
Target:  5'- gGGCCAUguaccagugGGGCAg-GACUGCUcgUCGUc -3'
miRNA:   3'- aCCGGUG---------CCUGUagUUGAUGAa-AGCG- -5'
5156 5' -49.9 NC_001798.1 + 136587 0.66 0.995362
Target:  5'- aGGCCACacaguccgugcgggGGACGggcccgggCAACUGCaa-CGCa -3'
miRNA:   3'- aCCGGUG--------------CCUGUa-------GUUGAUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 134681 0.71 0.94307
Target:  5'- gGGUCACGGcGCGgguGCUGCUgccgCGCg -3'
miRNA:   3'- aCCGGUGCC-UGUaguUGAUGAaa--GCG- -5'
5156 5' -49.9 NC_001798.1 + 133077 0.66 0.996797
Target:  5'- cGGCCgcacGCGGuuCAUCuaccugguGCUGCUggaggccugucUUCGCg -3'
miRNA:   3'- aCCGG----UGCCu-GUAGu-------UGAUGA-----------AAGCG- -5'
5156 5' -49.9 NC_001798.1 + 132296 0.66 0.995574
Target:  5'- cGGCaguuUACGGACcgCGuGCUGCUgcuccacUCGCu -3'
miRNA:   3'- aCCG----GUGCCUGuaGU-UGAUGAa------AGCG- -5'
5156 5' -49.9 NC_001798.1 + 128586 0.72 0.903667
Target:  5'- gGGCCgcgcggacGCGGGCGUCAACgACga-CGCc -3'
miRNA:   3'- aCCGG--------UGCCUGUAGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 122475 0.67 0.993996
Target:  5'- cGGCC-CaGACGgc-GCUGCUgcgUCGCu -3'
miRNA:   3'- aCCGGuGcCUGUaguUGAUGAa--AGCG- -5'
5156 5' -49.9 NC_001798.1 + 122145 0.71 0.933104
Target:  5'- gGGCCGCGGGCGaggacguccUCAACgACg--UGCu -3'
miRNA:   3'- aCCGGUGCCUGU---------AGUUGaUGaaaGCG- -5'
5156 5' -49.9 NC_001798.1 + 120285 0.74 0.843695
Target:  5'- aUGGCCACGGccgaGUCcuGGCUGCUgUUGCc -3'
miRNA:   3'- -ACCGGUGCCug--UAG--UUGAUGAaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 118927 0.68 0.989492
Target:  5'- aGGCgACGGACGUgCGcCUGgagUCGCu -3'
miRNA:   3'- aCCGgUGCCUGUA-GUuGAUgaaAGCG- -5'
5156 5' -49.9 NC_001798.1 + 117631 1.12 0.007314
Target:  5'- gUGGCCACGGACAUCAACUACUUUCGCc -3'
miRNA:   3'- -ACCGGUGCCUGUAGUUGAUGAAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.