miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 115950 1.08 0.003748
Target:  5'- aAGCCGCGAUUCACGGCAACGAGCACGu -3'
miRNA:   3'- -UCGGCGCUAAGUGCCGUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 9127 0.83 0.165015
Target:  5'- cGCCGCGAgguggUCuGCGGCAcGCGGGCGCGg -3'
miRNA:   3'- uCGGCGCUa----AG-UGCCGU-UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 94527 0.79 0.303613
Target:  5'- gAGCCGCGuguuGUUCGCGGgcGCGAGCGCc -3'
miRNA:   3'- -UCGGCGC----UAAGUGCCguUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 104501 0.78 0.3179
Target:  5'- uGGCCGCGugccaaaaaCGCGGCGGCG-GCGCGg -3'
miRNA:   3'- -UCGGCGCuaa------GUGCCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 27170 0.77 0.363756
Target:  5'- uGCUGCGAgcUCGgGGCcGCGGGCGCGg -3'
miRNA:   3'- uCGGCGCUa-AGUgCCGuUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 4416 0.77 0.363756
Target:  5'- cGCCGgGggUCGCGGCGACaGGCugGc -3'
miRNA:   3'- uCGGCgCuaAGUGCCGUUGcUCGugC- -5'
5157 3' -55.4 NC_001798.1 + 78392 0.77 0.388343
Target:  5'- uGGUCGCGug-CGCGGCGGCguugGAGCGCGu -3'
miRNA:   3'- -UCGGCGCuaaGUGCCGUUG----CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 58392 0.77 0.393389
Target:  5'- gAGCCGCGucagacccucgCGCGGCGcaggcggccagcGCGAGCGCGc -3'
miRNA:   3'- -UCGGCGCuaa--------GUGCCGU------------UGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 24414 0.76 0.422775
Target:  5'- cGGCgGCGGcgUCGcCGGcCGACGAGCGCGc -3'
miRNA:   3'- -UCGgCGCUa-AGU-GCC-GUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 26491 0.76 0.440664
Target:  5'- cGGCCGCGGgccgCGCGGgGACGGuGCugGc -3'
miRNA:   3'- -UCGGCGCUaa--GUGCCgUUGCU-CGugC- -5'
5157 3' -55.4 NC_001798.1 + 143666 0.75 0.448854
Target:  5'- aGGuaGCGAUUCGCGGCGAgGAaaugcugGCACGu -3'
miRNA:   3'- -UCggCGCUAAGUGCCGUUgCU-------CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 97796 0.75 0.458976
Target:  5'- cGCCGCGGUgccaacggcuUCGCGGCG-CGcGCGCGc -3'
miRNA:   3'- uCGGCGCUA----------AGUGCCGUuGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 2501 0.75 0.477685
Target:  5'- cGCCGCGGggCGCGGCGGCcgcGGCGgCGg -3'
miRNA:   3'- uCGGCGCUaaGUGCCGUUGc--UCGU-GC- -5'
5157 3' -55.4 NC_001798.1 + 130397 0.75 0.48718
Target:  5'- cGGCCaugGCGAgggCaaagGCGGCGACGAGCGCc -3'
miRNA:   3'- -UCGG---CGCUaa-G----UGCCGUUGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 98638 0.75 0.496763
Target:  5'- uGGCCGCGAccgUCGCGGCgAACGGGgGu- -3'
miRNA:   3'- -UCGGCGCUa--AGUGCCG-UUGCUCgUgc -5'
5157 3' -55.4 NC_001798.1 + 71081 0.74 0.50643
Target:  5'- aAGCCGCGucagccCGCGGuCGGCGuGCGCGc -3'
miRNA:   3'- -UCGGCGCuaa---GUGCC-GUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 42216 0.74 0.525998
Target:  5'- cGCCGCGGgucggcgugCGCGGCGACGAaCGCc -3'
miRNA:   3'- uCGGCGCUaa-------GUGCCGUUGCUcGUGc -5'
5157 3' -55.4 NC_001798.1 + 22287 0.74 0.525998
Target:  5'- uGCCGCGcgggcggaGCGGCGGCG-GCGCGa -3'
miRNA:   3'- uCGGCGCuaag----UGCCGUUGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 2263 0.74 0.545844
Target:  5'- cGCCGgGGggCGgGGCGGCGcAGCGCGc -3'
miRNA:   3'- uCGGCgCUaaGUgCCGUUGC-UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 24782 0.74 0.545844
Target:  5'- gAGCUGCGGUUCGUGcGCGACGcGCugGu -3'
miRNA:   3'- -UCGGCGCUAAGUGC-CGUUGCuCGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.