miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5157 3' -55.4 NC_001798.1 + 59 0.68 0.854079
Target:  5'- gGGgCGCGAaggCgggcgGCGGCGGCGGGCggGCGg -3'
miRNA:   3'- -UCgGCGCUaa-G-----UGCCGUUGCUCG--UGC- -5'
5157 3' -55.4 NC_001798.1 + 1363 0.67 0.876614
Target:  5'- gGGCCGCcgcgCACGGCGucGCGccccAGCGCc -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGU--UGC----UCGUGc -5'
5157 3' -55.4 NC_001798.1 + 1429 0.67 0.903582
Target:  5'- cAGCgCGCGcAggCGCGGU-GCGAGUGCGc -3'
miRNA:   3'- -UCG-GCGC-UaaGUGCCGuUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 1533 0.68 0.846156
Target:  5'- cGCCGgGAg-CACGGCGcgGCGGuacucGCGCGg -3'
miRNA:   3'- uCGGCgCUaaGUGCCGU--UGCU-----CGUGC- -5'
5157 3' -55.4 NC_001798.1 + 1644 0.68 0.861037
Target:  5'- cGGCgGCGcgUCGgGGUAcaggcgcGCGuGCGCGg -3'
miRNA:   3'- -UCGgCGCuaAGUgCCGU-------UGCuCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 1813 0.68 0.846156
Target:  5'- uGCCGCGAgacCACGGgcccguCGGCGGGCcaguccGCGg -3'
miRNA:   3'- uCGGCGCUaa-GUGCC------GUUGCUCG------UGC- -5'
5157 3' -55.4 NC_001798.1 + 2203 0.72 0.657782
Target:  5'- aGGCCGCcg--CGCGGCGcaGCGGGCcCGa -3'
miRNA:   3'- -UCGGCGcuaaGUGCCGU--UGCUCGuGC- -5'
5157 3' -55.4 NC_001798.1 + 2235 0.67 0.876614
Target:  5'- cGCaGCGGgccgaaGGCGGCGGGCGCGc -3'
miRNA:   3'- uCGgCGCUaagug-CCGUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 2263 0.74 0.545844
Target:  5'- cGCCGgGGggCGgGGCGGCGcAGCGCGc -3'
miRNA:   3'- uCGGCgCUaaGUgCCGUUGC-UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 2501 0.75 0.477685
Target:  5'- cGCCGCGGggCGCGGCGGCcgcGGCGgCGg -3'
miRNA:   3'- uCGGCGCUaaGUGCCGUUGc--UCGU-GC- -5'
5157 3' -55.4 NC_001798.1 + 2569 0.69 0.792069
Target:  5'- cGGCCGCGGggcggggggcguccgCGCGGCucuucuucGGgGGGCGCGg -3'
miRNA:   3'- -UCGGCGCUaa-------------GUGCCG--------UUgCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 2671 0.71 0.708452
Target:  5'- -cCCGCGg--CGCGGaGGCGGGCGCGg -3'
miRNA:   3'- ucGGCGCuaaGUGCCgUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 2760 0.68 0.861037
Target:  5'- aGGuCCGCGGcg-GCGGCGGCGgcggagcucagcaGGCGCGg -3'
miRNA:   3'- -UC-GGCGCUaagUGCCGUUGC-------------UCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 3007 0.66 0.909746
Target:  5'- cGGgCGCGGgggCGCGGCGGgcCGGGCucCGg -3'
miRNA:   3'- -UCgGCGCUaa-GUGCCGUU--GCUCGu-GC- -5'
5157 3' -55.4 NC_001798.1 + 3195 0.7 0.76701
Target:  5'- cGGCCcCGGccggCGCGGaGGCGGGCGCGg -3'
miRNA:   3'- -UCGGcGCUaa--GUGCCgUUGCUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 3240 0.7 0.738148
Target:  5'- gGGCgGCGAgcaccccCGCGGCGccguagccgGCGGGCACc -3'
miRNA:   3'- -UCGgCGCUaa-----GUGCCGU---------UGCUCGUGc -5'
5157 3' -55.4 NC_001798.1 + 3321 0.67 0.890553
Target:  5'- gGGCgGCG----GCGGCGGCGGGCuucccGCGg -3'
miRNA:   3'- -UCGgCGCuaagUGCCGUUGCUCG-----UGC- -5'
5157 3' -55.4 NC_001798.1 + 3412 0.69 0.81259
Target:  5'- cGCCGCGuucUCGCGcGCcAGCagGGGCGCGu -3'
miRNA:   3'- uCGGCGCua-AGUGC-CG-UUG--CUCGUGC- -5'
5157 3' -55.4 NC_001798.1 + 4416 0.77 0.363756
Target:  5'- cGCCGgGggUCGCGGCGACaGGCugGc -3'
miRNA:   3'- uCGGCgCuaAGUGCCGUUGcUCGugC- -5'
5157 3' -55.4 NC_001798.1 + 4839 0.67 0.883695
Target:  5'- gGGCCGCGcggCGgGGCGACG-GUcCGg -3'
miRNA:   3'- -UCGGCGCuaaGUgCCGUUGCuCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.