miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 89311 0.67 0.407174
Target:  5'- cGGUCUCGCGCGcgaCCUCCUCGcGCu -3'
miRNA:   3'- cUCGGGGCGCGCaagGGAGGGGC-CGu -5'
5158 3' -65.4 NC_001798.1 + 90407 0.67 0.423615
Target:  5'- uGGgCCgGCGCGUUCCCgcggCCgGGCu -3'
miRNA:   3'- cUCgGGgCGCGCAAGGGag--GGgCCGu -5'
5158 3' -65.4 NC_001798.1 + 91580 0.66 0.501254
Target:  5'- gGGGCgCCGCG-GUUUCUUUuuaucggCCCGGCAg -3'
miRNA:   3'- -CUCGgGGCGCgCAAGGGAG-------GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 92985 0.66 0.475214
Target:  5'- -uGgCCCGCGCGgccgCCCa-CCUGGCGu -3'
miRNA:   3'- cuCgGGGCGCGCaa--GGGagGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 93558 0.66 0.502163
Target:  5'- uGGCCaugCUGUGCGggUUCUCUCCGGCc -3'
miRNA:   3'- cUCGG---GGCGCGCaaGGGAGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 94612 0.67 0.449005
Target:  5'- aAGCCCgacaaGCGCGUggacaUCCUCCUCGGa- -3'
miRNA:   3'- cUCGGGg----CGCGCAa----GGGAGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 95033 0.73 0.193102
Target:  5'- cGGGgCCCGCGCGcugauggacUCCCUcgacgcgcaCCCCGGCGc -3'
miRNA:   3'- -CUCgGGGCGCGCa--------AGGGA---------GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 98596 0.66 0.511295
Target:  5'- cGGCCCCG-GCGg-----CCCCGGCGg -3'
miRNA:   3'- cUCGGGGCgCGCaagggaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 100223 0.66 0.484119
Target:  5'- uGGCCgucuccaCGUGCGUgCCCgucgCCCCGGaCAa -3'
miRNA:   3'- cUCGGg------GCGCGCAaGGGa---GGGGCC-GU- -5'
5158 3' -65.4 NC_001798.1 + 105257 0.69 0.317377
Target:  5'- -cGUCCCGCGCGgcaUCcgCCUCUUCGGCc -3'
miRNA:   3'- cuCGGGGCGCGCa--AG--GGAGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 109020 0.66 0.475214
Target:  5'- -cGCCCC-CGCGgugcUCCCcgggCCuCCGGCc -3'
miRNA:   3'- cuCGGGGcGCGCa---AGGGa---GG-GGCCGu -5'
5158 3' -65.4 NC_001798.1 + 111151 0.71 0.260377
Target:  5'- -cGgCCCGCGCG-UCgCUCCCCaccGGCAc -3'
miRNA:   3'- cuCgGGGCGCGCaAGgGAGGGG---CCGU- -5'
5158 3' -65.4 NC_001798.1 + 111596 0.67 0.449005
Target:  5'- gGGGCCCgGCGgGgcggccUCCUggagCCCCGGgGg -3'
miRNA:   3'- -CUCGGGgCGCgCa-----AGGGa---GGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 111739 0.71 0.260377
Target:  5'- uGGCCCC-CGCGccCCCggCCCCGGUc -3'
miRNA:   3'- cUCGGGGcGCGCaaGGGa-GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 115349 1.07 0.000591
Target:  5'- gGAGCCCCGCGCGUUCCCUCCCCGGCAg -3'
miRNA:   3'- -CUCGGGGCGCGCAAGGGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 116990 0.7 0.272887
Target:  5'- cGGCCCUGCGCGaccuggcgcgcgacgUCCCccugguccCCCCGGCc -3'
miRNA:   3'- cUCGGGGCGCGCa--------------AGGGa-------GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 118391 0.68 0.383277
Target:  5'- gGGGCuCCUGCGCacgacagaCCUCCCCGuGCGu -3'
miRNA:   3'- -CUCG-GGGCGCGcaag----GGAGGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 123947 0.68 0.375521
Target:  5'- gGGGCCUgGUG-Gca-CCUCCCCGGCGg -3'
miRNA:   3'- -CUCGGGgCGCgCaagGGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 127942 0.74 0.148572
Target:  5'- gGGGCCCCGgGCGaaaaggCCCggcccgcgUCCCCGGCc -3'
miRNA:   3'- -CUCGGGGCgCGCaa----GGG--------AGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 128163 0.68 0.391139
Target:  5'- cGGCCugCUGCGCGgcgUCCgCUCCCCucuGGCc -3'
miRNA:   3'- cUCGG--GGCGCGCa--AGG-GAGGGG---CCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.