miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 48097 0.67 0.423615
Target:  5'- cGAGCCCCacgGCGcCGUggaCC-CCCCGGg- -3'
miRNA:   3'- -CUCGGGG---CGC-GCAag-GGaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 48815 0.68 0.378611
Target:  5'- aGGGCCCCGgccuuuuucuguCGCGggucccggaUCCCUCCCCcccucuccgccgccgGGCGc -3'
miRNA:   3'- -CUCGGGGC------------GCGCa--------AGGGAGGGG---------------CCGU- -5'
5158 3' -65.4 NC_001798.1 + 51160 0.69 0.331254
Target:  5'- cGGGUCCCGaCGCGcgUCCgaggCCCgGGCGg -3'
miRNA:   3'- -CUCGGGGC-GCGCaaGGGa---GGGgCCGU- -5'
5158 3' -65.4 NC_001798.1 + 51619 0.72 0.229302
Target:  5'- cGGGCUgUCGCGCGUgggggucaugcacuuUgCCUCCCCGGCc -3'
miRNA:   3'- -CUCGG-GGCGCGCA---------------AgGGAGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 54618 0.66 0.493103
Target:  5'- -cGCCCC-CGCGccUCCCgCCCC-GCAa -3'
miRNA:   3'- cuCGGGGcGCGCa-AGGGaGGGGcCGU- -5'
5158 3' -65.4 NC_001798.1 + 58094 0.67 0.415345
Target:  5'- aGGCCCCGCagggucGCGgccgCCCagggCCCGGCGu -3'
miRNA:   3'- cUCGGGGCG------CGCaa--GGGag--GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 71412 0.71 0.243322
Target:  5'- gGGGUgCCCGCGCGgaCgCC-CCCCGGCc -3'
miRNA:   3'- -CUCG-GGGCGCGCaaG-GGaGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 73218 0.66 0.493103
Target:  5'- -cGCCUCG-GCGUUucggCCUUCCgCCGGCc -3'
miRNA:   3'- cuCGGGGCgCGCAA----GGGAGG-GGCCGu -5'
5158 3' -65.4 NC_001798.1 + 73900 0.68 0.375521
Target:  5'- gGGGCCCCGCGaCGUgCUgUCCgCGGa- -3'
miRNA:   3'- -CUCGGGGCGC-GCAaGGgAGGgGCCgu -5'
5158 3' -65.4 NC_001798.1 + 74132 0.7 0.297391
Target:  5'- -uGCCCCGCGCacacgUUCUUCgCCGGCc -3'
miRNA:   3'- cuCGGGGCGCGca---AGGGAGgGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 74743 0.66 0.484119
Target:  5'- gGGGaCCCCGCccGCGaagCCCUcggCCCCGGaCGc -3'
miRNA:   3'- -CUC-GGGGCG--CGCaa-GGGA---GGGGCC-GU- -5'
5158 3' -65.4 NC_001798.1 + 76014 0.71 0.232476
Target:  5'- aGGGCCCCGUGCccgCCCgCCCUGGg- -3'
miRNA:   3'- -CUCGGGGCGCGcaaGGGaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 77262 0.69 0.310605
Target:  5'- cGGCCCUggGCGCGgccgCCCgcgaCCCGGCc -3'
miRNA:   3'- cUCGGGG--CGCGCaa--GGGag--GGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 78428 0.67 0.431984
Target:  5'- aGAGCCCCGUgaagaacacgGCGUacgccgaguaugUCgCCUUcgugaCCCGGCAg -3'
miRNA:   3'- -CUCGGGGCG----------CGCA------------AG-GGAG-----GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 80545 0.7 0.301308
Target:  5'- cGGCCCgGCGgGggggcgcgaggcgUCCCUCCCCgaGGCc -3'
miRNA:   3'- cUCGGGgCGCgCa------------AGGGAGGGG--CCGu -5'
5158 3' -65.4 NC_001798.1 + 81456 0.66 0.493103
Target:  5'- cGGCCCCaCGCccaaUCCggCCCCGGCc -3'
miRNA:   3'- cUCGGGGcGCGca--AGGgaGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 81656 0.69 0.345573
Target:  5'- cGAGUCCCcccgcggaugccGCGC-UUCCUcCCCCGGCc -3'
miRNA:   3'- -CUCGGGG------------CGCGcAAGGGaGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 81778 0.66 0.461138
Target:  5'- cGGGCCuCCGCcccccccgaggggugGCGUccgccggcacUCCCcgCCCCGGUc -3'
miRNA:   3'- -CUCGG-GGCG---------------CGCA----------AGGGa-GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 82069 0.76 0.108113
Target:  5'- gGGGCCCCGCgGCcggCCCaCCCCGGCGc -3'
miRNA:   3'- -CUCGGGGCG-CGcaaGGGaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 86179 0.68 0.399105
Target:  5'- cGGCCCCGCGUuuugcgcaGUUCgCCgagCCCCaGCc -3'
miRNA:   3'- cUCGGGGCGCG--------CAAG-GGa--GGGGcCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.