miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 27981 0.67 0.412064
Target:  5'- -cGCCCCG-GCGcUCCagccgugccgcgCCCCGGCGc -3'
miRNA:   3'- cuCGGGGCgCGCaAGGga----------GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 28362 0.67 0.423615
Target:  5'- cGGCCCCcCGCGUcCCCgCCCgCGGaCGc -3'
miRNA:   3'- cUCGGGGcGCGCAaGGGaGGG-GCC-GU- -5'
5158 3' -65.4 NC_001798.1 + 29014 0.79 0.067189
Target:  5'- -cGCCgCCGCGCGggCCCggacuccgCCCCGGCGa -3'
miRNA:   3'- cuCGG-GGCGCGCaaGGGa-------GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 29049 0.68 0.375521
Target:  5'- -cGCCCCGCGCcgg--CUUCCCGGUAu -3'
miRNA:   3'- cuCGGGGCGCGcaaggGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 29616 0.7 0.295447
Target:  5'- cAGCCCCGUGUGacggucgggccgcaUUCgCaCCCCGGCAc -3'
miRNA:   3'- cUCGGGGCGCGC--------------AAGgGaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 29790 0.72 0.197685
Target:  5'- cGAGCuCCCGgGCGgaCCCcggCCCCGaGCGg -3'
miRNA:   3'- -CUCG-GGGCgCGCaaGGGa--GGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 30212 0.67 0.440448
Target:  5'- -cGCCCCGCGCccucuaaaUCCC-CCCCGuuGCu -3'
miRNA:   3'- cuCGGGGCGCGca------AGGGaGGGGC--CGu -5'
5158 3' -65.4 NC_001798.1 + 30829 0.66 0.511295
Target:  5'- cGGCCCCGCGC--UCCCugUCgCUGGgGg -3'
miRNA:   3'- cUCGGGGCGCGcaAGGG--AGgGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 31416 0.66 0.475214
Target:  5'- cAGCCCCGCGCGg-CCCaggagCCCCc--- -3'
miRNA:   3'- cUCGGGGCGCGCaaGGGa----GGGGccgu -5'
5158 3' -65.4 NC_001798.1 + 31601 0.72 0.207134
Target:  5'- -cGCCCCGCGCGUccggagUCCg-CCCCGcGCc -3'
miRNA:   3'- cuCGGGGCGCGCA------AGGgaGGGGC-CGu -5'
5158 3' -65.4 NC_001798.1 + 31951 0.66 0.492201
Target:  5'- -cGCCCCGCGCucgcCCCUCgCCCcccagggggugggGGCc -3'
miRNA:   3'- cuCGGGGCGCGcaa-GGGAG-GGG-------------CCGu -5'
5158 3' -65.4 NC_001798.1 + 32368 0.66 0.493103
Target:  5'- cGGCCCCGaGCccgGggCCCgcgaCCCGGCGc -3'
miRNA:   3'- cUCGGGGCgCG---CaaGGGag--GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 32580 0.68 0.352897
Target:  5'- cGGCCCC-CGCGUggagCCgccgcacccugCUCCCCGaGCAc -3'
miRNA:   3'- cUCGGGGcGCGCAa---GG-----------GAGGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 33931 0.69 0.338359
Target:  5'- --aCCCgCGCGCGUgccuaccuuUCCCUagcggCCCCGGCc -3'
miRNA:   3'- cucGGG-GCGCGCA---------AGGGA-----GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 34126 0.68 0.399105
Target:  5'- cGGGCccgaCCCGCGCcugCCC-CCCCGGgAa -3'
miRNA:   3'- -CUCG----GGGCGCGcaaGGGaGGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 34878 0.66 0.466391
Target:  5'- cGGCgCCGgGCGgcuaCCCgggacCCCCGGCc -3'
miRNA:   3'- cUCGgGGCgCGCaa--GGGa----GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 35201 0.66 0.465513
Target:  5'- cGGGCCCC-UGCGUUCguugcugCCgcgcCCCCGGUu -3'
miRNA:   3'- -CUCGGGGcGCGCAAG-------GGa---GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 44874 0.71 0.25287
Target:  5'- aGAGCCgCGCGCGUguuccgggauggcgUCCCUgCUCGGg- -3'
miRNA:   3'- -CUCGGgGCGCGCA--------------AGGGAgGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 47588 0.66 0.50672
Target:  5'- aAGCgCCGCGCGggacccacgaggagCUguacuauggcccgguCUCCCCGGCGg -3'
miRNA:   3'- cUCGgGGCGCGCaa------------GG---------------GAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 47835 0.74 0.152199
Target:  5'- cGGCCCCGCGCGcgCuCCUccaccCCCCGGgGg -3'
miRNA:   3'- cUCGGGGCGCGCaaG-GGA-----GGGGCCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.