miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 100 0.77 0.088166
Target:  5'- cAGCCCCGCGCGcccccuuccccgUCCCUCcCCCGGa- -3'
miRNA:   3'- cUCGGGGCGCGCa-----------AGGGAG-GGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 201 0.68 0.399105
Target:  5'- -cGcCCCCGCGCGgcuuuuUUCCCgcgcccgcCCCCGcGCGg -3'
miRNA:   3'- cuC-GGGGCGCGC------AAGGGa-------GGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 570 0.72 0.216471
Target:  5'- -cGCCCCGUGCcUUCCCUCCCgcuccugCGGgGg -3'
miRNA:   3'- cuCGGGGCGCGcAAGGGAGGG-------GCCgU- -5'
5158 3' -65.4 NC_001798.1 + 1317 0.68 0.375521
Target:  5'- cAGCgCCCGCGCGcagaacUCCCgCCgCGGCc -3'
miRNA:   3'- cUCG-GGGCGCGCa-----AGGGaGGgGCCGu -5'
5158 3' -65.4 NC_001798.1 + 2107 0.71 0.25689
Target:  5'- -cGCCCCcgGCGCGgcccgcggccaggUCCUCgCCCGGCAg -3'
miRNA:   3'- cuCGGGG--CGCGCaa-----------GGGAG-GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 2416 0.69 0.310605
Target:  5'- aGGGCgCCgGCGUGUggCUgggCCCCGGCGg -3'
miRNA:   3'- -CUCG-GGgCGCGCAagGGa--GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 2461 0.67 0.415345
Target:  5'- -cGCCCUGCGgGUcggggCCCUCggcgggCCGGCGg -3'
miRNA:   3'- cuCGGGGCGCgCAa----GGGAGg-----GGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 2798 0.73 0.183782
Target:  5'- cGGGCUCCGCGgcagcgcCGggCCCagggCCCCGGCGa -3'
miRNA:   3'- -CUCGGGGCGC-------GCaaGGGa---GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 3000 0.67 0.449005
Target:  5'- cGGGCCCCgggcgcggggGCGCGgcgggccgggCuCCggccagCCCCGGCAc -3'
miRNA:   3'- -CUCGGGG----------CGCGCaa--------G-GGa-----GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 4037 0.66 0.475214
Target:  5'- cGGCCaccgCCGCGCGggCCCggcggcgCUCCaGGCGg -3'
miRNA:   3'- cUCGG----GGCGCGCaaGGGa------GGGG-CCGU- -5'
5158 3' -65.4 NC_001798.1 + 5551 0.7 0.266275
Target:  5'- cGGCCCCGCGC--UCCCguuggCCCCcgccGGCc -3'
miRNA:   3'- cUCGGGGCGCGcaAGGGa----GGGG----CCGu -5'
5158 3' -65.4 NC_001798.1 + 7627 0.66 0.457654
Target:  5'- cGGCaCCGCGCGgaccggCCCccggagucCCCCGGCu -3'
miRNA:   3'- cUCGgGGCGCGCaa----GGGa-------GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 15555 0.74 0.145023
Target:  5'- cGGCCCCGgGCGUUgCCgccgCCgCGGCGg -3'
miRNA:   3'- cUCGGGGCgCGCAAgGGa---GGgGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 18997 0.66 0.463761
Target:  5'- -uGCCCCuGCGUGUuuucggcUCCUgcaucaagagcgCCCCGGCc -3'
miRNA:   3'- cuCGGGG-CGCGCA-------AGGGa-----------GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 21077 0.66 0.474328
Target:  5'- gGGGCCCCGUccccccgGCccgUCCCcccguccCCCCGGCc -3'
miRNA:   3'- -CUCGGGGCG-------CGca-AGGGa------GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 25144 0.69 0.338359
Target:  5'- -cGCCCCGCgGCcgcCCCUCCCgCGGgGg -3'
miRNA:   3'- cuCGGGGCG-CGcaaGGGAGGG-GCCgU- -5'
5158 3' -65.4 NC_001798.1 + 25430 0.68 0.391139
Target:  5'- uGGCCgCGCGCugcgccgCCCcgccCCCCGGCGg -3'
miRNA:   3'- cUCGGgGCGCGcaa----GGGa---GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 25601 0.67 0.415345
Target:  5'- cGGGCCgCGCcggggGCGggCCCcCCCCGGa- -3'
miRNA:   3'- -CUCGGgGCG-----CGCaaGGGaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 27860 0.66 0.466391
Target:  5'- -cGCCCCGaCGCGcUCCggCUCCGGg- -3'
miRNA:   3'- cuCGGGGC-GCGCaAGGgaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 27923 0.68 0.364842
Target:  5'- gGGGuCCCCGcCGcCGgggUCCCggcgccggccgcgCCCCGGCGc -3'
miRNA:   3'- -CUC-GGGGC-GC-GCa--AGGGa------------GGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.