miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 154539 0.68 0.399105
Target:  5'- -cGcCCCCGCGCGgcuuuuUUCCCgcgcccgcCCCCGcGCGg -3'
miRNA:   3'- cuC-GGGGCGCGC------AAGGGa-------GGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 154438 0.77 0.088166
Target:  5'- cAGCCCCGCGCGcccccuuccccgUCCCUCcCCCGGa- -3'
miRNA:   3'- cUCGGGGCGCGCa-----------AGGGAG-GGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 152646 0.66 0.483224
Target:  5'- -cGCCCCGCcgGCGcggCCCUgaguggugcccgcCCCCGGgGa -3'
miRNA:   3'- cuCGGGGCG--CGCaa-GGGA-------------GGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 152105 0.69 0.331254
Target:  5'- cGGCCCCGUcaaGCGUcCCCgcCCCCGaGCc -3'
miRNA:   3'- cUCGGGGCG---CGCAaGGGa-GGGGC-CGu -5'
5158 3' -65.4 NC_001798.1 + 151858 0.7 0.264495
Target:  5'- gGAcCCCCGCGcCGUgucccccgugucccUCCCUcaCCCCGGCc -3'
miRNA:   3'- -CUcGGGGCGC-GCA--------------AGGGA--GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 150699 0.69 0.310605
Target:  5'- -cGCgCCUGCGCGcgCCCcCCgCCGGCc -3'
miRNA:   3'- cuCG-GGGCGCGCaaGGGaGG-GGCCGu -5'
5158 3' -65.4 NC_001798.1 + 150231 0.67 0.423615
Target:  5'- gGGGaCCCCGgGUccUCCCUCcgcgCCCGGCc -3'
miRNA:   3'- -CUC-GGGGCgCGcaAGGGAG----GGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 150046 0.68 0.399105
Target:  5'- gGGGCCCgGCGCGgcgccgCCCU-CuuGGCc -3'
miRNA:   3'- -CUCGGGgCGCGCaa----GGGAgGggCCGu -5'
5158 3' -65.4 NC_001798.1 + 149694 0.67 0.440448
Target:  5'- -cGCCCuCGCGUGgcgCgUCUUCCUGGCAc -3'
miRNA:   3'- cuCGGG-GCGCGCaa-G-GGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 147255 0.66 0.510379
Target:  5'- nGGCCgCGCcggcggcguuuccGCGUuccguuucuucUCCCUCCCgGGCc -3'
miRNA:   3'- cUCGGgGCG-------------CGCA-----------AGGGAGGGgCCGu -5'
5158 3' -65.4 NC_001798.1 + 147219 0.69 0.33055
Target:  5'- cGGGCCCCcggcggaGCGCGggggCCCcggggCCCCGGg- -3'
miRNA:   3'- -CUCGGGG-------CGCGCaa--GGGa----GGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 147178 0.67 0.415345
Target:  5'- cGGCgCCGgGCGgaaggcgUCCCcCgCCCGGCGg -3'
miRNA:   3'- cUCGgGGCgCGCa------AGGGaG-GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 147064 0.67 0.440448
Target:  5'- gGGGcCCCCGCaccucgGCGgccgCCCcCUCCGGCGc -3'
miRNA:   3'- -CUC-GGGGCG------CGCaa--GGGaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 145506 0.71 0.243322
Target:  5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3'
miRNA:   3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 145464 0.71 0.243322
Target:  5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3'
miRNA:   3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 145422 0.71 0.243322
Target:  5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3'
miRNA:   3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 145340 0.67 0.407174
Target:  5'- --cCCCCGCGUccucCCCUCCCCuGCGc -3'
miRNA:   3'- cucGGGGCGCGcaa-GGGAGGGGcCGU- -5'
5158 3' -65.4 NC_001798.1 + 145306 0.67 0.440448
Target:  5'- --cCCCCGCGUccucCCCUCCCCcGCGu -3'
miRNA:   3'- cucGGGGCGCGcaa-GGGAGGGGcCGU- -5'
5158 3' -65.4 NC_001798.1 + 144802 0.66 0.511295
Target:  5'- aGGGCCCgGCGCGUcgUUgUUUCCUGGg- -3'
miRNA:   3'- -CUCGGGgCGCGCA--AGgGAGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 139005 0.67 0.423615
Target:  5'- --aCCCCG-GCGauaucgCCCUCCCgGGCGu -3'
miRNA:   3'- cucGGGGCgCGCaa----GGGAGGGgCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.