miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 115349 1.07 0.000591
Target:  5'- gGAGCCCCGCGCGUUCCCUCCCCGGCAg -3'
miRNA:   3'- -CUCGGGGCGCGCAAGGGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 29014 0.79 0.067189
Target:  5'- -cGCCgCCGCGCGggCCCggacuccgCCCCGGCGa -3'
miRNA:   3'- cuCGG-GGCGCGCaaGGGa-------GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 154438 0.77 0.088166
Target:  5'- cAGCCCCGCGCGcccccuuccccgUCCCUCcCCCGGa- -3'
miRNA:   3'- cUCGGGGCGCGCa-----------AGGGAG-GGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 100 0.77 0.088166
Target:  5'- cAGCCCCGCGCGcccccuuccccgUCCCUCcCCCGGa- -3'
miRNA:   3'- cUCGGGGCGCGCa-----------AGGGAG-GGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 82069 0.76 0.108113
Target:  5'- gGGGCCCCGCgGCcggCCCaCCCCGGCGc -3'
miRNA:   3'- -CUCGGGGCG-CGcaaGGGaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 134726 0.76 0.119316
Target:  5'- uGAGCCCgGCGacggGUUCUCcgCCCCGGCGc -3'
miRNA:   3'- -CUCGGGgCGCg---CAAGGGa-GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 15555 0.74 0.145023
Target:  5'- cGGCCCCGgGCGUUgCCgccgCCgCGGCGg -3'
miRNA:   3'- cUCGGGGCgCGCAAgGGa---GGgGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 127942 0.74 0.148572
Target:  5'- gGGGCCCCGgGCGaaaaggCCCggcccgcgUCCCCGGCc -3'
miRNA:   3'- -CUCGGGGCgCGCaa----GGG--------AGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 47835 0.74 0.152199
Target:  5'- cGGCCCCGCGCGcgCuCCUccaccCCCCGGgGg -3'
miRNA:   3'- cUCGGGGCGCGCaaG-GGA-----GGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 2798 0.73 0.183782
Target:  5'- cGGGCUCCGCGgcagcgcCGggCCCagggCCCCGGCGa -3'
miRNA:   3'- -CUCGGGGCGC-------GCaaGGGa---GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 138725 0.73 0.188613
Target:  5'- aAGCCCCgggccgGCGCGcUCCgCggCCCCGGCGa -3'
miRNA:   3'- cUCGGGG------CGCGCaAGG-Ga-GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 95033 0.73 0.193102
Target:  5'- cGGGgCCCGCGCGcugauggacUCCCUcgacgcgcaCCCCGGCGc -3'
miRNA:   3'- -CUCgGGGCGCGCa--------AGGGA---------GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 29790 0.72 0.197685
Target:  5'- cGAGCuCCCGgGCGgaCCCcggCCCCGaGCGg -3'
miRNA:   3'- -CUCG-GGGCgCGCaaGGGa--GGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 31601 0.72 0.207134
Target:  5'- -cGCCCCGCGCGUccggagUCCg-CCCCGcGCc -3'
miRNA:   3'- cuCGGGGCGCGCA------AGGgaGGGGC-CGu -5'
5158 3' -65.4 NC_001798.1 + 570 0.72 0.216471
Target:  5'- -cGCCCCGUGCcUUCCCUCCCgcuccugCGGgGg -3'
miRNA:   3'- cuCGGGGCGCGcAAGGGAGGG-------GCCgU- -5'
5158 3' -65.4 NC_001798.1 + 51619 0.72 0.229302
Target:  5'- cGGGCUgUCGCGCGUgggggucaugcacuuUgCCUCCCCGGCc -3'
miRNA:   3'- -CUCGG-GGCGCGCA---------------AgGGAGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 76014 0.71 0.232476
Target:  5'- aGGGCCCCGUGCccgCCCgCCCUGGg- -3'
miRNA:   3'- -CUCGGGGCGCGcaaGGGaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 145506 0.71 0.243322
Target:  5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3'
miRNA:   3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 145464 0.71 0.243322
Target:  5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3'
miRNA:   3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 145422 0.71 0.243322
Target:  5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3'
miRNA:   3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.