miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 145506 0.71 0.243322
Target:  5'- cGGCCgCCGCGCGccCCCg-CCCGGCc -3'
miRNA:   3'- cUCGG-GGCGCGCaaGGGagGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 44874 0.71 0.25287
Target:  5'- aGAGCCgCGCGCGUguuccgggauggcgUCCCUgCUCGGg- -3'
miRNA:   3'- -CUCGGgGCGCGCA--------------AGGGAgGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 135578 0.71 0.254587
Target:  5'- cGGCauacgCCCGCGCcucgccCCCUCCCUGGCGc -3'
miRNA:   3'- cUCG-----GGGCGCGcaa---GGGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 2107 0.71 0.25689
Target:  5'- -cGCCCCcgGCGCGgcccgcggccaggUCCUCgCCCGGCAg -3'
miRNA:   3'- cuCGGGG--CGCGCaa-----------GGGAG-GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 111739 0.71 0.260377
Target:  5'- uGGCCCC-CGCGccCCCggCCCCGGUc -3'
miRNA:   3'- cUCGGGGcGCGCaaGGGa-GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 111151 0.71 0.260377
Target:  5'- -cGgCCCGCGCG-UCgCUCCCCaccGGCAc -3'
miRNA:   3'- cuCgGGGCGCGCaAGgGAGGGG---CCGU- -5'
5158 3' -65.4 NC_001798.1 + 151858 0.7 0.264495
Target:  5'- gGAcCCCCGCGcCGUgucccccgugucccUCCCUcaCCCCGGCc -3'
miRNA:   3'- -CUcGGGGCGC-GCA--------------AGGGA--GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 5551 0.7 0.266275
Target:  5'- cGGCCCCGCGC--UCCCguuggCCCCcgccGGCc -3'
miRNA:   3'- cUCGGGGCGCGcaAGGGa----GGGG----CCGu -5'
5158 3' -65.4 NC_001798.1 + 116990 0.7 0.272887
Target:  5'- cGGCCCUGCGCGaccuggcgcgcgacgUCCCccugguccCCCCGGCc -3'
miRNA:   3'- cUCGGGGCGCGCa--------------AGGGa-------GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 29616 0.7 0.295447
Target:  5'- cAGCCCCGUGUGacggucgggccgcaUUCgCaCCCCGGCAc -3'
miRNA:   3'- cUCGGGGCGCGC--------------AAGgGaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 74132 0.7 0.297391
Target:  5'- -uGCCCCGCGCacacgUUCUUCgCCGGCc -3'
miRNA:   3'- cuCGGGGCGCGca---AGGGAGgGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 80545 0.7 0.301308
Target:  5'- cGGCCCgGCGgGggggcgcgaggcgUCCCUCCCCgaGGCc -3'
miRNA:   3'- cUCGGGgCGCgCa------------AGGGAGGGG--CCGu -5'
5158 3' -65.4 NC_001798.1 + 150699 0.69 0.310605
Target:  5'- -cGCgCCUGCGCGcgCCCcCCgCCGGCc -3'
miRNA:   3'- cuCG-GGGCGCGCaaGGGaGG-GGCCGu -5'
5158 3' -65.4 NC_001798.1 + 77262 0.69 0.310605
Target:  5'- cGGCCCUggGCGCGgccgCCCgcgaCCCGGCc -3'
miRNA:   3'- cUCGGGG--CGCGCaa--GGGag--GGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 2416 0.69 0.310605
Target:  5'- aGGGCgCCgGCGUGUggCUgggCCCCGGCGg -3'
miRNA:   3'- -CUCG-GGgCGCGCAagGGa--GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 105257 0.69 0.317377
Target:  5'- -cGUCCCGCGCGgcaUCcgCCUCUUCGGCc -3'
miRNA:   3'- cuCGGGGCGCGCa--AG--GGAGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 147219 0.69 0.33055
Target:  5'- cGGGCCCCcggcggaGCGCGggggCCCcggggCCCCGGg- -3'
miRNA:   3'- -CUCGGGG-------CGCGCaa--GGGa----GGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 152105 0.69 0.331254
Target:  5'- cGGCCCCGUcaaGCGUcCCCgcCCCCGaGCc -3'
miRNA:   3'- cUCGGGGCG---CGCAaGGGa-GGGGC-CGu -5'
5158 3' -65.4 NC_001798.1 + 51160 0.69 0.331254
Target:  5'- cGGGUCCCGaCGCGcgUCCgaggCCCgGGCGg -3'
miRNA:   3'- -CUCGGGGC-GCGCaaGGGa---GGGgCCGU- -5'
5158 3' -65.4 NC_001798.1 + 134435 0.69 0.331254
Target:  5'- uGGCCcuguCCGCGCGcgUCgCCgagcaCCCCGGCGc -3'
miRNA:   3'- cUCGG----GGCGCGCa-AG-GGa----GGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.