miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 21077 0.66 0.474328
Target:  5'- gGGGCCCCGUccccccgGCccgUCCCcccguccCCCCGGCc -3'
miRNA:   3'- -CUCGGGGCG-------CGca-AGGGa------GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 27860 0.66 0.466391
Target:  5'- -cGCCCCGaCGCGcUCCggCUCCGGg- -3'
miRNA:   3'- cuCGGGGC-GCGCaAGGgaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 137442 0.66 0.466391
Target:  5'- -cGCCCCGCGgGgacgCgCUCgCCCGGa- -3'
miRNA:   3'- cuCGGGGCGCgCaa--GgGAG-GGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 34878 0.66 0.466391
Target:  5'- cGGCgCCGgGCGgcuaCCCgggacCCCCGGCc -3'
miRNA:   3'- cUCGgGGCgCGCaa--GGGa----GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 35201 0.66 0.465513
Target:  5'- cGGGCCCC-UGCGUUCguugcugCCgcgcCCCCGGUu -3'
miRNA:   3'- -CUCGGGGcGCGCAAG-------GGa---GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 18997 0.66 0.463761
Target:  5'- -uGCCCCuGCGUGUuuucggcUCCUgcaucaagagcgCCCCGGCc -3'
miRNA:   3'- cuCGGGG-CGCGCA-------AGGGa-----------GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 81778 0.66 0.461138
Target:  5'- cGGGCCuCCGCcccccccgaggggugGCGUccgccggcacUCCCcgCCCCGGUc -3'
miRNA:   3'- -CUCGG-GGCG---------------CGCA----------AGGGa-GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 7627 0.66 0.457654
Target:  5'- cGGCaCCGCGCGgaccggCCCccggagucCCCCGGCu -3'
miRNA:   3'- cUCGgGGCGCGCaa----GGGa-------GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 94612 0.67 0.449005
Target:  5'- aAGCCCgacaaGCGCGUggacaUCCUCCUCGGa- -3'
miRNA:   3'- cUCGGGg----CGCGCAa----GGGAGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 111596 0.67 0.449005
Target:  5'- gGGGCCCgGCGgGgcggccUCCUggagCCCCGGgGg -3'
miRNA:   3'- -CUCGGGgCGCgCa-----AGGGa---GGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 3000 0.67 0.449005
Target:  5'- cGGGCCCCgggcgcggggGCGCGgcgggccgggCuCCggccagCCCCGGCAc -3'
miRNA:   3'- -CUCGGGG----------CGCGCaa--------G-GGa-----GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 147064 0.67 0.440448
Target:  5'- gGGGcCCCCGCaccucgGCGgccgCCCcCUCCGGCGc -3'
miRNA:   3'- -CUC-GGGGCG------CGCaa--GGGaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 149694 0.67 0.440448
Target:  5'- -cGCCCuCGCGUGgcgCgUCUUCCUGGCAc -3'
miRNA:   3'- cuCGGG-GCGCGCaa-G-GGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 30212 0.67 0.440448
Target:  5'- -cGCCCCGCGCccucuaaaUCCC-CCCCGuuGCu -3'
miRNA:   3'- cuCGGGGCGCGca------AGGGaGGGGC--CGu -5'
5158 3' -65.4 NC_001798.1 + 145306 0.67 0.440448
Target:  5'- --cCCCCGCGUccucCCCUCCCCcGCGu -3'
miRNA:   3'- cucGGGGCGCGcaa-GGGAGGGGcCGU- -5'
5158 3' -65.4 NC_001798.1 + 78428 0.67 0.431984
Target:  5'- aGAGCCCCGUgaagaacacgGCGUacgccgaguaugUCgCCUUcgugaCCCGGCAg -3'
miRNA:   3'- -CUCGGGGCG----------CGCA------------AG-GGAG-----GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 48097 0.67 0.423615
Target:  5'- cGAGCCCCacgGCGcCGUggaCC-CCCCGGg- -3'
miRNA:   3'- -CUCGGGG---CGC-GCAag-GGaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 28362 0.67 0.423615
Target:  5'- cGGCCCCcCGCGUcCCCgCCCgCGGaCGc -3'
miRNA:   3'- cUCGGGGcGCGCAaGGGaGGG-GCC-GU- -5'
5158 3' -65.4 NC_001798.1 + 150231 0.67 0.423615
Target:  5'- gGGGaCCCCGgGUccUCCCUCcgcgCCCGGCc -3'
miRNA:   3'- -CUC-GGGGCgCGcaAGGGAG----GGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 90407 0.67 0.423615
Target:  5'- uGGgCCgGCGCGUUCCCgcggCCgGGCu -3'
miRNA:   3'- cUCgGGgCGCGCAAGGGag--GGgCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.