Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5158 | 3' | -65.4 | NC_001798.1 | + | 115349 | 1.07 | 0.000591 |
Target: 5'- gGAGCCCCGCGCGUUCCCUCCCCGGCAg -3' miRNA: 3'- -CUCGGGGCGCGCAAGGGAGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 32368 | 0.66 | 0.493103 |
Target: 5'- cGGCCCCGaGCccgGggCCCgcgaCCCGGCGc -3' miRNA: 3'- cUCGGGGCgCG---CaaGGGag--GGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 30829 | 0.66 | 0.511295 |
Target: 5'- cGGCCCCGCGC--UCCCugUCgCUGGgGg -3' miRNA: 3'- cUCGGGGCGCGcaAGGG--AGgGGCCgU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 98596 | 0.66 | 0.511295 |
Target: 5'- cGGCCCCG-GCGg-----CCCCGGCGg -3' miRNA: 3'- cUCGGGGCgCGCaagggaGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 147255 | 0.66 | 0.510379 |
Target: 5'- nGGCCgCGCcggcggcguuuccGCGUuccguuucuucUCCCUCCCgGGCc -3' miRNA: 3'- cUCGGgGCG-------------CGCA-----------AGGGAGGGgCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 47588 | 0.66 | 0.50672 |
Target: 5'- aAGCgCCGCGCGggacccacgaggagCUguacuauggcccgguCUCCCCGGCGg -3' miRNA: 3'- cUCGgGGCGCGCaa------------GG---------------GAGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 93558 | 0.66 | 0.502163 |
Target: 5'- uGGCCaugCUGUGCGggUUCUCUCCGGCc -3' miRNA: 3'- cUCGG---GGCGCGCaaGGGAGGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 91580 | 0.66 | 0.501254 |
Target: 5'- gGGGCgCCGCG-GUUUCUUUuuaucggCCCGGCAg -3' miRNA: 3'- -CUCGgGGCGCgCAAGGGAG-------GGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 54618 | 0.66 | 0.493103 |
Target: 5'- -cGCCCC-CGCGccUCCCgCCCC-GCAa -3' miRNA: 3'- cuCGGGGcGCGCa-AGGGaGGGGcCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 81456 | 0.66 | 0.493103 |
Target: 5'- cGGCCCCaCGCccaaUCCggCCCCGGCc -3' miRNA: 3'- cUCGGGGcGCGca--AGGgaGGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 73218 | 0.66 | 0.493103 |
Target: 5'- -cGCCUCG-GCGUUucggCCUUCCgCCGGCc -3' miRNA: 3'- cuCGGGGCgCGCAA----GGGAGG-GGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 144802 | 0.66 | 0.511295 |
Target: 5'- aGGGCCCgGCGCGUcgUUgUUUCCUGGg- -3' miRNA: 3'- -CUCGGGgCGCGCA--AGgGAGGGGCCgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 31951 | 0.66 | 0.492201 |
Target: 5'- -cGCCCCGCGCucgcCCCUCgCCCcccagggggugggGGCc -3' miRNA: 3'- cuCGGGGCGCGcaa-GGGAG-GGG-------------CCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 128811 | 0.66 | 0.484119 |
Target: 5'- cGAGCCaaGUacGCGUUcgacCCCgcggaCCCCGGCGc -3' miRNA: 3'- -CUCGGggCG--CGCAA----GGGa----GGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 74743 | 0.66 | 0.484119 |
Target: 5'- gGGGaCCCCGCccGCGaagCCCUcggCCCCGGaCGc -3' miRNA: 3'- -CUC-GGGGCG--CGCaa-GGGA---GGGGCC-GU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 100223 | 0.66 | 0.484119 |
Target: 5'- uGGCCgucuccaCGUGCGUgCCCgucgCCCCGGaCAa -3' miRNA: 3'- cUCGGg------GCGCGCAaGGGa---GGGGCC-GU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 152646 | 0.66 | 0.483224 |
Target: 5'- -cGCCCCGCcgGCGcggCCCUgaguggugcccgcCCCCGGgGa -3' miRNA: 3'- cuCGGGGCG--CGCaa-GGGA-------------GGGGCCgU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 109020 | 0.66 | 0.475214 |
Target: 5'- -cGCCCC-CGCGgugcUCCCcgggCCuCCGGCc -3' miRNA: 3'- cuCGGGGcGCGCa---AGGGa---GG-GGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 31416 | 0.66 | 0.475214 |
Target: 5'- cAGCCCCGCGCGg-CCCaggagCCCCc--- -3' miRNA: 3'- cUCGGGGCGCGCaaGGGa----GGGGccgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 4037 | 0.66 | 0.475214 |
Target: 5'- cGGCCaccgCCGCGCGggCCCggcggcgCUCCaGGCGg -3' miRNA: 3'- cUCGG----GGCGCGCaaGGGa------GGGG-CCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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