Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5158 | 3' | -65.4 | NC_001798.1 | + | 93558 | 0.66 | 0.502163 |
Target: 5'- uGGCCaugCUGUGCGggUUCUCUCCGGCc -3' miRNA: 3'- cUCGG---GGCGCGCaaGGGAGGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 47588 | 0.66 | 0.50672 |
Target: 5'- aAGCgCCGCGCGggacccacgaggagCUguacuauggcccgguCUCCCCGGCGg -3' miRNA: 3'- cUCGgGGCGCGCaa------------GG---------------GAGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 147255 | 0.66 | 0.510379 |
Target: 5'- nGGCCgCGCcggcggcguuuccGCGUuccguuucuucUCCCUCCCgGGCc -3' miRNA: 3'- cUCGGgGCG-------------CGCA-----------AGGGAGGGgCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 98596 | 0.66 | 0.511295 |
Target: 5'- cGGCCCCG-GCGg-----CCCCGGCGg -3' miRNA: 3'- cUCGGGGCgCGCaagggaGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 30829 | 0.66 | 0.511295 |
Target: 5'- cGGCCCCGCGC--UCCCugUCgCUGGgGg -3' miRNA: 3'- cUCGGGGCGCGcaAGGG--AGgGGCCgU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 100223 | 0.66 | 0.484119 |
Target: 5'- uGGCCgucuccaCGUGCGUgCCCgucgCCCCGGaCAa -3' miRNA: 3'- cUCGGg------GCGCGCAaGGGa---GGGGCC-GU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 152646 | 0.66 | 0.483224 |
Target: 5'- -cGCCCCGCcgGCGcggCCCUgaguggugcccgcCCCCGGgGa -3' miRNA: 3'- cuCGGGGCG--CGCaa-GGGA-------------GGGGCCgU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 94612 | 0.67 | 0.449005 |
Target: 5'- aAGCCCgacaaGCGCGUggacaUCCUCCUCGGa- -3' miRNA: 3'- cUCGGGg----CGCGCAa----GGGAGGGGCCgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 7627 | 0.66 | 0.457654 |
Target: 5'- cGGCaCCGCGCGgaccggCCCccggagucCCCCGGCu -3' miRNA: 3'- cUCGgGGCGCGCaa----GGGa-------GGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 81778 | 0.66 | 0.461138 |
Target: 5'- cGGGCCuCCGCcccccccgaggggugGCGUccgccggcacUCCCcgCCCCGGUc -3' miRNA: 3'- -CUCGG-GGCG---------------CGCA----------AGGGa-GGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 18997 | 0.66 | 0.463761 |
Target: 5'- -uGCCCCuGCGUGUuuucggcUCCUgcaucaagagcgCCCCGGCc -3' miRNA: 3'- cuCGGGG-CGCGCA-------AGGGa-----------GGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 35201 | 0.66 | 0.465513 |
Target: 5'- cGGGCCCC-UGCGUUCguugcugCCgcgcCCCCGGUu -3' miRNA: 3'- -CUCGGGGcGCGCAAG-------GGa---GGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 34878 | 0.66 | 0.466391 |
Target: 5'- cGGCgCCGgGCGgcuaCCCgggacCCCCGGCc -3' miRNA: 3'- cUCGgGGCgCGCaa--GGGa----GGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 137442 | 0.66 | 0.466391 |
Target: 5'- -cGCCCCGCGgGgacgCgCUCgCCCGGa- -3' miRNA: 3'- cuCGGGGCGCgCaa--GgGAG-GGGCCgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 27860 | 0.66 | 0.466391 |
Target: 5'- -cGCCCCGaCGCGcUCCggCUCCGGg- -3' miRNA: 3'- cuCGGGGC-GCGCaAGGgaGGGGCCgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 21077 | 0.66 | 0.474328 |
Target: 5'- gGGGCCCCGUccccccgGCccgUCCCcccguccCCCCGGCc -3' miRNA: 3'- -CUCGGGGCG-------CGca-AGGGa------GGGGCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 92985 | 0.66 | 0.475214 |
Target: 5'- -uGgCCCGCGCGgccgCCCa-CCUGGCGu -3' miRNA: 3'- cuCgGGGCGCGCaa--GGGagGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 4037 | 0.66 | 0.475214 |
Target: 5'- cGGCCaccgCCGCGCGggCCCggcggcgCUCCaGGCGg -3' miRNA: 3'- cUCGG----GGCGCGCaaGGGa------GGGG-CCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 31416 | 0.66 | 0.475214 |
Target: 5'- cAGCCCCGCGCGg-CCCaggagCCCCc--- -3' miRNA: 3'- cUCGGGGCGCGCaaGGGa----GGGGccgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 109020 | 0.66 | 0.475214 |
Target: 5'- -cGCCCC-CGCGgugcUCCCcgggCCuCCGGCc -3' miRNA: 3'- cuCGGGGcGCGCa---AGGGa---GG-GGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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