Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5158 | 3' | -65.4 | NC_001798.1 | + | 94612 | 0.67 | 0.449005 |
Target: 5'- aAGCCCgacaaGCGCGUggacaUCCUCCUCGGa- -3' miRNA: 3'- cUCGGGg----CGCGCAa----GGGAGGGGCCgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 111596 | 0.67 | 0.449005 |
Target: 5'- gGGGCCCgGCGgGgcggccUCCUggagCCCCGGgGg -3' miRNA: 3'- -CUCGGGgCGCgCa-----AGGGa---GGGGCCgU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 3000 | 0.67 | 0.449005 |
Target: 5'- cGGGCCCCgggcgcggggGCGCGgcgggccgggCuCCggccagCCCCGGCAc -3' miRNA: 3'- -CUCGGGG----------CGCGCaa--------G-GGa-----GGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 145306 | 0.67 | 0.440448 |
Target: 5'- --cCCCCGCGUccucCCCUCCCCcGCGu -3' miRNA: 3'- cucGGGGCGCGcaa-GGGAGGGGcCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 30212 | 0.67 | 0.440448 |
Target: 5'- -cGCCCCGCGCccucuaaaUCCC-CCCCGuuGCu -3' miRNA: 3'- cuCGGGGCGCGca------AGGGaGGGGC--CGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 149694 | 0.67 | 0.440448 |
Target: 5'- -cGCCCuCGCGUGgcgCgUCUUCCUGGCAc -3' miRNA: 3'- cuCGGG-GCGCGCaa-G-GGAGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 147064 | 0.67 | 0.440448 |
Target: 5'- gGGGcCCCCGCaccucgGCGgccgCCCcCUCCGGCGc -3' miRNA: 3'- -CUC-GGGGCG------CGCaa--GGGaGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 78428 | 0.67 | 0.431984 |
Target: 5'- aGAGCCCCGUgaagaacacgGCGUacgccgaguaugUCgCCUUcgugaCCCGGCAg -3' miRNA: 3'- -CUCGGGGCG----------CGCA------------AG-GGAG-----GGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 139005 | 0.67 | 0.423615 |
Target: 5'- --aCCCCG-GCGauaucgCCCUCCCgGGCGu -3' miRNA: 3'- cucGGGGCgCGCaa----GGGAGGGgCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 73900 | 0.68 | 0.375521 |
Target: 5'- gGGGCCCCGCGaCGUgCUgUCCgCGGa- -3' miRNA: 3'- -CUCGGGGCGC-GCAaGGgAGGgGCCgu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 29049 | 0.68 | 0.375521 |
Target: 5'- -cGCCCCGCGCcgg--CUUCCCGGUAu -3' miRNA: 3'- cuCGGGGCGCGcaaggGAGGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 48815 | 0.68 | 0.378611 |
Target: 5'- aGGGCCCCGgccuuuuucuguCGCGggucccggaUCCCUCCCCcccucuccgccgccgGGCGc -3' miRNA: 3'- -CUCGGGGC------------GCGCa--------AGGGAGGGG---------------CCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 118391 | 0.68 | 0.383277 |
Target: 5'- gGGGCuCCUGCGCacgacagaCCUCCCCGuGCGu -3' miRNA: 3'- -CUCG-GGGCGCGcaag----GGAGGGGC-CGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 25430 | 0.68 | 0.391139 |
Target: 5'- uGGCCgCGCGCugcgccgCCCcgccCCCCGGCGg -3' miRNA: 3'- cUCGGgGCGCGcaa----GGGa---GGGGCCGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 128163 | 0.68 | 0.391139 |
Target: 5'- cGGCCugCUGCGCGgcgUCCgCUCCCCucuGGCc -3' miRNA: 3'- cUCGG--GGCGCGCa--AGG-GAGGGG---CCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 34126 | 0.68 | 0.399105 |
Target: 5'- cGGGCccgaCCCGCGCcugCCC-CCCCGGgAa -3' miRNA: 3'- -CUCG----GGGCGCGcaaGGGaGGGGCCgU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 150046 | 0.68 | 0.399105 |
Target: 5'- gGGGCCCgGCGCGgcgccgCCCU-CuuGGCc -3' miRNA: 3'- -CUCGGGgCGCGCaa----GGGAgGggCCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 86179 | 0.68 | 0.399105 |
Target: 5'- cGGCCCCGCGUuuugcgcaGUUCgCCgagCCCCaGCc -3' miRNA: 3'- cUCGGGGCGCG--------CAAG-GGa--GGGGcCGu -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 201 | 0.68 | 0.399105 |
Target: 5'- -cGcCCCCGCGCGgcuuuuUUCCCgcgcccgcCCCCGcGCGg -3' miRNA: 3'- cuC-GGGGCGCGC------AAGGGa-------GGGGC-CGU- -5' |
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5158 | 3' | -65.4 | NC_001798.1 | + | 1317 | 0.68 | 0.375521 |
Target: 5'- cAGCgCCCGCGCGcagaacUCCCgCCgCGGCc -3' miRNA: 3'- cUCG-GGGCGCGCa-----AGGGaGGgGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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