miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 93558 0.66 0.502163
Target:  5'- uGGCCaugCUGUGCGggUUCUCUCCGGCc -3'
miRNA:   3'- cUCGG---GGCGCGCaaGGGAGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 91580 0.66 0.501254
Target:  5'- gGGGCgCCGCG-GUUUCUUUuuaucggCCCGGCAg -3'
miRNA:   3'- -CUCGgGGCGCgCAAGGGAG-------GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 54618 0.66 0.493103
Target:  5'- -cGCCCC-CGCGccUCCCgCCCC-GCAa -3'
miRNA:   3'- cuCGGGGcGCGCa-AGGGaGGGGcCGU- -5'
5158 3' -65.4 NC_001798.1 + 81456 0.66 0.493103
Target:  5'- cGGCCCCaCGCccaaUCCggCCCCGGCc -3'
miRNA:   3'- cUCGGGGcGCGca--AGGgaGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 73218 0.66 0.493103
Target:  5'- -cGCCUCG-GCGUUucggCCUUCCgCCGGCc -3'
miRNA:   3'- cuCGGGGCgCGCAA----GGGAGG-GGCCGu -5'
5158 3' -65.4 NC_001798.1 + 32368 0.66 0.493103
Target:  5'- cGGCCCCGaGCccgGggCCCgcgaCCCGGCGc -3'
miRNA:   3'- cUCGGGGCgCG---CaaGGGag--GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 31951 0.66 0.492201
Target:  5'- -cGCCCCGCGCucgcCCCUCgCCCcccagggggugggGGCc -3'
miRNA:   3'- cuCGGGGCGCGcaa-GGGAG-GGG-------------CCGu -5'
5158 3' -65.4 NC_001798.1 + 128811 0.66 0.484119
Target:  5'- cGAGCCaaGUacGCGUUcgacCCCgcggaCCCCGGCGc -3'
miRNA:   3'- -CUCGGggCG--CGCAA----GGGa----GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 78428 0.67 0.431984
Target:  5'- aGAGCCCCGUgaagaacacgGCGUacgccgaguaugUCgCCUUcgugaCCCGGCAg -3'
miRNA:   3'- -CUCGGGGCG----------CGCA------------AG-GGAG-----GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 139005 0.67 0.423615
Target:  5'- --aCCCCG-GCGauaucgCCCUCCCgGGCGu -3'
miRNA:   3'- cucGGGGCgCGCaa----GGGAGGGgCCGU- -5'
5158 3' -65.4 NC_001798.1 + 48097 0.67 0.423615
Target:  5'- cGAGCCCCacgGCGcCGUggaCC-CCCCGGg- -3'
miRNA:   3'- -CUCGGGG---CGC-GCAag-GGaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 28362 0.67 0.423615
Target:  5'- cGGCCCCcCGCGUcCCCgCCCgCGGaCGc -3'
miRNA:   3'- cUCGGGGcGCGCAaGGGaGGG-GCC-GU- -5'
5158 3' -65.4 NC_001798.1 + 150231 0.67 0.423615
Target:  5'- gGGGaCCCCGgGUccUCCCUCcgcgCCCGGCc -3'
miRNA:   3'- -CUC-GGGGCgCGcaAGGGAG----GGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 147064 0.67 0.440448
Target:  5'- gGGGcCCCCGCaccucgGCGgccgCCCcCUCCGGCGc -3'
miRNA:   3'- -CUC-GGGGCG------CGCaa--GGGaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 149694 0.67 0.440448
Target:  5'- -cGCCCuCGCGUGgcgCgUCUUCCUGGCAc -3'
miRNA:   3'- cuCGGG-GCGCGCaa-G-GGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 30212 0.67 0.440448
Target:  5'- -cGCCCCGCGCccucuaaaUCCC-CCCCGuuGCu -3'
miRNA:   3'- cuCGGGGCGCGca------AGGGaGGGGC--CGu -5'
5158 3' -65.4 NC_001798.1 + 145306 0.67 0.440448
Target:  5'- --cCCCCGCGUccucCCCUCCCCcGCGu -3'
miRNA:   3'- cucGGGGCGCGcaa-GGGAGGGGcCGU- -5'
5158 3' -65.4 NC_001798.1 + 3000 0.67 0.449005
Target:  5'- cGGGCCCCgggcgcggggGCGCGgcgggccgggCuCCggccagCCCCGGCAc -3'
miRNA:   3'- -CUCGGGG----------CGCGCaa--------G-GGa-----GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 111596 0.67 0.449005
Target:  5'- gGGGCCCgGCGgGgcggccUCCUggagCCCCGGgGg -3'
miRNA:   3'- -CUCGGGgCGCgCa-----AGGGa---GGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 90407 0.67 0.423615
Target:  5'- uGGgCCgGCGCGUUCCCgcggCCgGGCu -3'
miRNA:   3'- cUCgGGgCGCGCAAGGGag--GGgCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.