miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 30829 0.66 0.511295
Target:  5'- cGGCCCCGCGC--UCCCugUCgCUGGgGg -3'
miRNA:   3'- cUCGGGGCGCGcaAGGG--AGgGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 98596 0.66 0.511295
Target:  5'- cGGCCCCG-GCGg-----CCCCGGCGg -3'
miRNA:   3'- cUCGGGGCgCGCaagggaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 144802 0.66 0.511295
Target:  5'- aGGGCCCgGCGCGUcgUUgUUUCCUGGg- -3'
miRNA:   3'- -CUCGGGgCGCGCA--AGgGAGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 147255 0.66 0.510379
Target:  5'- nGGCCgCGCcggcggcguuuccGCGUuccguuucuucUCCCUCCCgGGCc -3'
miRNA:   3'- cUCGGgGCG-------------CGCA-----------AGGGAGGGgCCGu -5'
5158 3' -65.4 NC_001798.1 + 47588 0.66 0.50672
Target:  5'- aAGCgCCGCGCGggacccacgaggagCUguacuauggcccgguCUCCCCGGCGg -3'
miRNA:   3'- cUCGgGGCGCGCaa------------GG---------------GAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 93558 0.66 0.502163
Target:  5'- uGGCCaugCUGUGCGggUUCUCUCCGGCc -3'
miRNA:   3'- cUCGG---GGCGCGCaaGGGAGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 91580 0.66 0.501254
Target:  5'- gGGGCgCCGCG-GUUUCUUUuuaucggCCCGGCAg -3'
miRNA:   3'- -CUCGgGGCGCgCAAGGGAG-------GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 32368 0.66 0.493103
Target:  5'- cGGCCCCGaGCccgGggCCCgcgaCCCGGCGc -3'
miRNA:   3'- cUCGGGGCgCG---CaaGGGag--GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 73218 0.66 0.493103
Target:  5'- -cGCCUCG-GCGUUucggCCUUCCgCCGGCc -3'
miRNA:   3'- cuCGGGGCgCGCAA----GGGAGG-GGCCGu -5'
5158 3' -65.4 NC_001798.1 + 81456 0.66 0.493103
Target:  5'- cGGCCCCaCGCccaaUCCggCCCCGGCc -3'
miRNA:   3'- cUCGGGGcGCGca--AGGgaGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 54618 0.66 0.493103
Target:  5'- -cGCCCC-CGCGccUCCCgCCCC-GCAa -3'
miRNA:   3'- cuCGGGGcGCGCa-AGGGaGGGGcCGU- -5'
5158 3' -65.4 NC_001798.1 + 31951 0.66 0.492201
Target:  5'- -cGCCCCGCGCucgcCCCUCgCCCcccagggggugggGGCc -3'
miRNA:   3'- cuCGGGGCGCGcaa-GGGAG-GGG-------------CCGu -5'
5158 3' -65.4 NC_001798.1 + 128811 0.66 0.484119
Target:  5'- cGAGCCaaGUacGCGUUcgacCCCgcggaCCCCGGCGc -3'
miRNA:   3'- -CUCGGggCG--CGCAA----GGGa----GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 74743 0.66 0.484119
Target:  5'- gGGGaCCCCGCccGCGaagCCCUcggCCCCGGaCGc -3'
miRNA:   3'- -CUC-GGGGCG--CGCaa-GGGA---GGGGCC-GU- -5'
5158 3' -65.4 NC_001798.1 + 100223 0.66 0.484119
Target:  5'- uGGCCgucuccaCGUGCGUgCCCgucgCCCCGGaCAa -3'
miRNA:   3'- cUCGGg------GCGCGCAaGGGa---GGGGCC-GU- -5'
5158 3' -65.4 NC_001798.1 + 152646 0.66 0.483224
Target:  5'- -cGCCCCGCcgGCGcggCCCUgaguggugcccgcCCCCGGgGa -3'
miRNA:   3'- cuCGGGGCG--CGCaa-GGGA-------------GGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 109020 0.66 0.475214
Target:  5'- -cGCCCC-CGCGgugcUCCCcgggCCuCCGGCc -3'
miRNA:   3'- cuCGGGGcGCGCa---AGGGa---GG-GGCCGu -5'
5158 3' -65.4 NC_001798.1 + 31416 0.66 0.475214
Target:  5'- cAGCCCCGCGCGg-CCCaggagCCCCc--- -3'
miRNA:   3'- cUCGGGGCGCGCaaGGGa----GGGGccgu -5'
5158 3' -65.4 NC_001798.1 + 4037 0.66 0.475214
Target:  5'- cGGCCaccgCCGCGCGggCCCggcggcgCUCCaGGCGg -3'
miRNA:   3'- cUCGG----GGCGCGCaaGGGa------GGGG-CCGU- -5'
5158 3' -65.4 NC_001798.1 + 92985 0.66 0.475214
Target:  5'- -uGgCCCGCGCGgccgCCCa-CCUGGCGu -3'
miRNA:   3'- cuCgGGGCGCGCaa--GGGagGGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.