miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 90407 0.67 0.423615
Target:  5'- uGGgCCgGCGCGUUCCCgcggCCgGGCu -3'
miRNA:   3'- cUCgGGgCGCGCAAGGGag--GGgCCGu -5'
5158 3' -65.4 NC_001798.1 + 147178 0.67 0.415345
Target:  5'- cGGCgCCGgGCGgaaggcgUCCCcCgCCCGGCGg -3'
miRNA:   3'- cUCGgGGCgCGCa------AGGGaG-GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 58094 0.67 0.415345
Target:  5'- aGGCCCCGCagggucGCGgccgCCCagggCCCGGCGu -3'
miRNA:   3'- cUCGGGGCG------CGCaa--GGGag--GGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 2461 0.67 0.415345
Target:  5'- -cGCCCUGCGgGUcggggCCCUCggcgggCCGGCGg -3'
miRNA:   3'- cuCGGGGCGCgCAa----GGGAGg-----GGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 25601 0.67 0.415345
Target:  5'- cGGGCCgCGCcggggGCGggCCCcCCCCGGa- -3'
miRNA:   3'- -CUCGGgGCG-----CGCaaGGGaGGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 27981 0.67 0.412064
Target:  5'- -cGCCCCG-GCGcUCCagccgugccgcgCCCCGGCGc -3'
miRNA:   3'- cuCGGGGCgCGCaAGGga----------GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 145340 0.67 0.407174
Target:  5'- --cCCCCGCGUccucCCCUCCCCuGCGc -3'
miRNA:   3'- cucGGGGCGCGcaa-GGGAGGGGcCGU- -5'
5158 3' -65.4 NC_001798.1 + 128899 0.67 0.407174
Target:  5'- -cGUUCCGgGCGUucauccgguccaUCCCcaaCCCCGGCGu -3'
miRNA:   3'- cuCGGGGCgCGCA------------AGGGa--GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 89311 0.67 0.407174
Target:  5'- cGGUCUCGCGCGcgaCCUCCUCGcGCu -3'
miRNA:   3'- cUCGGGGCGCGCaagGGAGGGGC-CGu -5'
5158 3' -65.4 NC_001798.1 + 154539 0.68 0.399105
Target:  5'- -cGcCCCCGCGCGgcuuuuUUCCCgcgcccgcCCCCGcGCGg -3'
miRNA:   3'- cuC-GGGGCGCGC------AAGGGa-------GGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 201 0.68 0.399105
Target:  5'- -cGcCCCCGCGCGgcuuuuUUCCCgcgcccgcCCCCGcGCGg -3'
miRNA:   3'- cuC-GGGGCGCGC------AAGGGa-------GGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 86179 0.68 0.399105
Target:  5'- cGGCCCCGCGUuuugcgcaGUUCgCCgagCCCCaGCc -3'
miRNA:   3'- cUCGGGGCGCG--------CAAG-GGa--GGGGcCGu -5'
5158 3' -65.4 NC_001798.1 + 150046 0.68 0.399105
Target:  5'- gGGGCCCgGCGCGgcgccgCCCU-CuuGGCc -3'
miRNA:   3'- -CUCGGGgCGCGCaa----GGGAgGggCCGu -5'
5158 3' -65.4 NC_001798.1 + 34126 0.68 0.399105
Target:  5'- cGGGCccgaCCCGCGCcugCCC-CCCCGGgAa -3'
miRNA:   3'- -CUCG----GGGCGCGcaaGGGaGGGGCCgU- -5'
5158 3' -65.4 NC_001798.1 + 128163 0.68 0.391139
Target:  5'- cGGCCugCUGCGCGgcgUCCgCUCCCCucuGGCc -3'
miRNA:   3'- cUCGG--GGCGCGCa--AGG-GAGGGG---CCGu -5'
5158 3' -65.4 NC_001798.1 + 25430 0.68 0.391139
Target:  5'- uGGCCgCGCGCugcgccgCCCcgccCCCCGGCGg -3'
miRNA:   3'- cUCGGgGCGCGcaa----GGGa---GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 118391 0.68 0.383277
Target:  5'- gGGGCuCCUGCGCacgacagaCCUCCCCGuGCGu -3'
miRNA:   3'- -CUCG-GGGCGCGcaag----GGAGGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 48815 0.68 0.378611
Target:  5'- aGGGCCCCGgccuuuuucuguCGCGggucccggaUCCCUCCCCcccucuccgccgccgGGCGc -3'
miRNA:   3'- -CUCGGGGC------------GCGCa--------AGGGAGGGG---------------CCGU- -5'
5158 3' -65.4 NC_001798.1 + 29049 0.68 0.375521
Target:  5'- -cGCCCCGCGCcgg--CUUCCCGGUAu -3'
miRNA:   3'- cuCGGGGCGCGcaaggGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 73900 0.68 0.375521
Target:  5'- gGGGCCCCGCGaCGUgCUgUCCgCGGa- -3'
miRNA:   3'- -CUCGGGGCGC-GCAaGGgAGGgGCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.