miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 3' -65.4 NC_001798.1 + 73900 0.68 0.375521
Target:  5'- gGGGCCCCGCGaCGUgCUgUCCgCGGa- -3'
miRNA:   3'- -CUCGGGGCGC-GCAaGGgAGGgGCCgu -5'
5158 3' -65.4 NC_001798.1 + 29049 0.68 0.375521
Target:  5'- -cGCCCCGCGCcgg--CUUCCCGGUAu -3'
miRNA:   3'- cuCGGGGCGCGcaaggGAGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 27923 0.68 0.364842
Target:  5'- gGGGuCCCCGcCGcCGgggUCCCggcgccggccgcgCCCCGGCGc -3'
miRNA:   3'- -CUC-GGGGC-GC-GCa--AGGGa------------GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 32580 0.68 0.352897
Target:  5'- cGGCCCC-CGCGUggagCCgccgcacccugCUCCCCGaGCAc -3'
miRNA:   3'- cUCGGGGcGCGCAa---GG-----------GAGGGGC-CGU- -5'
5158 3' -65.4 NC_001798.1 + 81656 0.69 0.345573
Target:  5'- cGAGUCCCcccgcggaugccGCGC-UUCCUcCCCCGGCc -3'
miRNA:   3'- -CUCGGGG------------CGCGcAAGGGaGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 25144 0.69 0.338359
Target:  5'- -cGCCCCGCgGCcgcCCCUCCCgCGGgGg -3'
miRNA:   3'- cuCGGGGCG-CGcaaGGGAGGG-GCCgU- -5'
5158 3' -65.4 NC_001798.1 + 33931 0.69 0.338359
Target:  5'- --aCCCgCGCGCGUgccuaccuuUCCCUagcggCCCCGGCc -3'
miRNA:   3'- cucGGG-GCGCGCA---------AGGGA-----GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 152105 0.69 0.331254
Target:  5'- cGGCCCCGUcaaGCGUcCCCgcCCCCGaGCc -3'
miRNA:   3'- cUCGGGGCG---CGCAaGGGa-GGGGC-CGu -5'
5158 3' -65.4 NC_001798.1 + 51160 0.69 0.331254
Target:  5'- cGGGUCCCGaCGCGcgUCCgaggCCCgGGCGg -3'
miRNA:   3'- -CUCGGGGC-GCGCaaGGGa---GGGgCCGU- -5'
5158 3' -65.4 NC_001798.1 + 134435 0.69 0.331254
Target:  5'- uGGCCcuguCCGCGCGcgUCgCCgagcaCCCCGGCGc -3'
miRNA:   3'- cUCGG----GGCGCGCa-AG-GGa----GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 147219 0.69 0.33055
Target:  5'- cGGGCCCCcggcggaGCGCGggggCCCcggggCCCCGGg- -3'
miRNA:   3'- -CUCGGGG-------CGCGCaa--GGGa----GGGGCCgu -5'
5158 3' -65.4 NC_001798.1 + 105257 0.69 0.317377
Target:  5'- -cGUCCCGCGCGgcaUCcgCCUCUUCGGCc -3'
miRNA:   3'- cuCGGGGCGCGCa--AG--GGAGGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 150699 0.69 0.310605
Target:  5'- -cGCgCCUGCGCGcgCCCcCCgCCGGCc -3'
miRNA:   3'- cuCG-GGGCGCGCaaGGGaGG-GGCCGu -5'
5158 3' -65.4 NC_001798.1 + 77262 0.69 0.310605
Target:  5'- cGGCCCUggGCGCGgccgCCCgcgaCCCGGCc -3'
miRNA:   3'- cUCGGGG--CGCGCaa--GGGag--GGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 2416 0.69 0.310605
Target:  5'- aGGGCgCCgGCGUGUggCUgggCCCCGGCGg -3'
miRNA:   3'- -CUCG-GGgCGCGCAagGGa--GGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 80545 0.7 0.301308
Target:  5'- cGGCCCgGCGgGggggcgcgaggcgUCCCUCCCCgaGGCc -3'
miRNA:   3'- cUCGGGgCGCgCa------------AGGGAGGGG--CCGu -5'
5158 3' -65.4 NC_001798.1 + 74132 0.7 0.297391
Target:  5'- -uGCCCCGCGCacacgUUCUUCgCCGGCc -3'
miRNA:   3'- cuCGGGGCGCGca---AGGGAGgGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 29616 0.7 0.295447
Target:  5'- cAGCCCCGUGUGacggucgggccgcaUUCgCaCCCCGGCAc -3'
miRNA:   3'- cUCGGGGCGCGC--------------AAGgGaGGGGCCGU- -5'
5158 3' -65.4 NC_001798.1 + 116990 0.7 0.272887
Target:  5'- cGGCCCUGCGCGaccuggcgcgcgacgUCCCccugguccCCCCGGCc -3'
miRNA:   3'- cUCGGGGCGCGCa--------------AGGGa-------GGGGCCGu -5'
5158 3' -65.4 NC_001798.1 + 5551 0.7 0.266275
Target:  5'- cGGCCCCGCGC--UCCCguuggCCCCcgccGGCc -3'
miRNA:   3'- cUCGGGGCGCGcaAGGGa----GGGG----CCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.