miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5158 5' -53.6 NC_001798.1 + 72765 0.76 0.495717
Target:  5'- --cGGGGGAccAGGuCC-CCGGGUUCUGu -3'
miRNA:   3'- aaaCCCCUU--UCCuGGuGGUCCAAGAC- -5'
5158 5' -53.6 NC_001798.1 + 85976 0.74 0.577367
Target:  5'- --cGGGGAguucGAGGccGCCGCCGGGgcgCUGg -3'
miRNA:   3'- aaaCCCCU----UUCC--UGGUGGUCCaa-GAC- -5'
5158 5' -53.6 NC_001798.1 + 88038 0.69 0.845689
Target:  5'- --cGGGGAGggcAGGGCCGCUGGGg---- -3'
miRNA:   3'- aaaCCCCUU---UCCUGGUGGUCCaagac -5'
5158 5' -53.6 NC_001798.1 + 95744 0.73 0.629945
Target:  5'- gUUUGGGG-AGGGACCACCggagaaaaAGGacCUGa -3'
miRNA:   3'- -AAACCCCuUUCCUGGUGG--------UCCaaGAC- -5'
5158 5' -53.6 NC_001798.1 + 104588 0.66 0.956377
Target:  5'- --cGGGGAAcgucgcccGGGGCCGCC-GGUa--- -3'
miRNA:   3'- aaaCCCCUU--------UCCUGGUGGuCCAagac -5'
5158 5' -53.6 NC_001798.1 + 112254 0.67 0.921731
Target:  5'- cUUUGGGGccugucccccGGACCACCAGGc---- -3'
miRNA:   3'- -AAACCCCuuu-------CCUGGUGGUCCaagac -5'
5158 5' -53.6 NC_001798.1 + 115383 1.05 0.007124
Target:  5'- uUUUGGGGAAAGGACCACCAGGUUCUGc -3'
miRNA:   3'- -AAACCCCUUUCCUGGUGGUCCAAGAC- -5'
5158 5' -53.6 NC_001798.1 + 119886 0.75 0.546256
Target:  5'- --gGGGGGAucccggucGGGGCCGCCAGGUa--- -3'
miRNA:   3'- aaaCCCCUU--------UCCUGGUGGUCCAagac -5'
5158 5' -53.6 NC_001798.1 + 137480 0.66 0.938736
Target:  5'- gUUGGGGAGGGGG--GCCGGGg---- -3'
miRNA:   3'- aAACCCCUUUCCUggUGGUCCaagac -5'
5158 5' -53.6 NC_001798.1 + 138883 0.66 0.94068
Target:  5'- aUUUGGGGAAGcuggucgguccgcuuGGGCCGCCcGGcgCa- -3'
miRNA:   3'- -AAACCCCUUU---------------CCUGGUGGuCCaaGac -5'
5158 5' -53.6 NC_001798.1 + 146298 0.66 0.952336
Target:  5'- --cGGGGAGuGGGCgGCCGGGc---- -3'
miRNA:   3'- aaaCCCCUUuCCUGgUGGUCCaagac -5'
5158 5' -53.6 NC_001798.1 + 148090 0.68 0.877058
Target:  5'- --gGGGGccGGGGCCGCUAGGg---- -3'
miRNA:   3'- aaaCCCCuuUCCUGGUGGUCCaagac -5'
5158 5' -53.6 NC_001798.1 + 150619 0.67 0.911022
Target:  5'- -aUGGGGGGcuccuGGGCCGCgCGGGgcugUCUc -3'
miRNA:   3'- aaACCCCUUu----CCUGGUG-GUCCa---AGAc -5'
5158 5' -53.6 NC_001798.1 + 153684 0.67 0.933701
Target:  5'- --cGGGGAcgcGGGGGCCGCCGccGGcgCa- -3'
miRNA:   3'- aaaCCCCU---UUCCUGGUGGU--CCaaGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.