miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 24559 0.69 0.843379
Target:  5'- cGguGGuGGcGGCGGCcggcgcgCgGAGGCGGGCCg -3'
miRNA:   3'- -CguCCuCC-UCGUUGa------G-CUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 26383 0.68 0.880623
Target:  5'- gGCGGGAGuucugcgcgcGGGCGcuGCUCGAgcccgacGGCGAcgcGCCc -3'
miRNA:   3'- -CGUCCUC----------CUCGU--UGAGCU-------CCGCU---UGG- -5'
5159 3' -54.6 NC_001798.1 + 26921 0.67 0.913741
Target:  5'- gGCGGGcGGGGGUcgGGCgggCGGGGuCGGGCg -3'
miRNA:   3'- -CGUCC-UCCUCG--UUGa--GCUCC-GCUUGg -5'
5159 3' -54.6 NC_001798.1 + 27160 0.69 0.834355
Target:  5'- -aGGGAGGGGCugcugcgAGCUCGGGGCc-GCg -3'
miRNA:   3'- cgUCCUCCUCG-------UUGAGCUCCGcuUGg -5'
5159 3' -54.6 NC_001798.1 + 27193 0.75 0.549965
Target:  5'- cGCGGGGGGAGgGGCgggggaagccccCGGGGCGGGgCg -3'
miRNA:   3'- -CGUCCUCCUCgUUGa-----------GCUCCGCUUgG- -5'
5159 3' -54.6 NC_001798.1 + 27230 0.69 0.859184
Target:  5'- cGCGGGGGaGGCGGCcgcggggGAGGCG-GCCg -3'
miRNA:   3'- -CGUCCUCcUCGUUGag-----CUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 27359 0.68 0.874163
Target:  5'- gGCGGGugcuuGGuGCAACUgucuggucugCGAgGGCGAGCg -3'
miRNA:   3'- -CGUCCu----CCuCGUUGA----------GCU-CCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 27555 0.74 0.582294
Target:  5'- -gGGGAGGGGCGGCgcccgCGGGG-GAGCg -3'
miRNA:   3'- cgUCCUCCUCGUUGa----GCUCCgCUUGg -5'
5159 3' -54.6 NC_001798.1 + 28778 0.67 0.919518
Target:  5'- aGgAGGAGGAgGCGGCggCGGcGGCGcGCg -3'
miRNA:   3'- -CgUCCUCCU-CGUUGa-GCU-CCGCuUGg -5'
5159 3' -54.6 NC_001798.1 + 29379 0.66 0.949145
Target:  5'- cCGGGGGcGGGCAccACUCaGGGcCGcGCCg -3'
miRNA:   3'- cGUCCUC-CUCGU--UGAGcUCC-GCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 29917 0.66 0.944802
Target:  5'- cGCGGGcggugggcucGGGGGCGggacGCUugaCGGGGCcGACCc -3'
miRNA:   3'- -CGUCC----------UCCUCGU----UGA---GCUCCGcUUGG- -5'
5159 3' -54.6 NC_001798.1 + 30384 0.74 0.582294
Target:  5'- aGCAcGGAcacGGAGaugUUCGAGGCGGGCCu -3'
miRNA:   3'- -CGU-CCU---CCUCguuGAGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 30759 0.66 0.949145
Target:  5'- cGCGuGGAGGccgaGGCGGC-CGu-GCGGGCCg -3'
miRNA:   3'- -CGU-CCUCC----UCGUUGaGCucCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 30936 0.67 0.935407
Target:  5'- gGCGGcGGGGGUcgGGCggGGGGCGGGCg -3'
miRNA:   3'- -CGUCcUCCUCG--UUGagCUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 31149 0.69 0.859184
Target:  5'- cGCGGGGGcGGCggUgcgGGGGCGAcCCg -3'
miRNA:   3'- -CGUCCUCcUCGuuGag-CUCCGCUuGG- -5'
5159 3' -54.6 NC_001798.1 + 31341 0.66 0.953255
Target:  5'- gGCGGGGGGcGCGcgcagGCgcggCGgguGGGCGAagacGCCg -3'
miRNA:   3'- -CGUCCUCCuCGU-----UGa---GC---UCCGCU----UGG- -5'
5159 3' -54.6 NC_001798.1 + 31549 0.69 0.859184
Target:  5'- -gGGGAGGucuGCcACagucgUCGGGGCGcGCCg -3'
miRNA:   3'- cgUCCUCCu--CGuUG-----AGCUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 32829 0.68 0.871236
Target:  5'- aGUAGGGGGAGCuaacACUCGgcuugcugcccgaAGGaagccgccccccacCGGACCa -3'
miRNA:   3'- -CGUCCUCCUCGu---UGAGC-------------UCC--------------GCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 33171 0.66 0.940224
Target:  5'- -gAGGAGGAGgAGgg-GGGGCGGGCa -3'
miRNA:   3'- cgUCCUCCUCgUUgagCUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 33400 0.66 0.954834
Target:  5'- aGUGGGAGGGcGCcuGGCUCGGGGaggGAggagggggggggucaGCCg -3'
miRNA:   3'- -CGUCCUCCU-CG--UUGAGCUCCg--CU---------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.