miRNA display CGI


Results 21 - 40 of 172 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 10899 0.66 0.953255
Target:  5'- gGguGGcAGGAGCcgucGgUCGGGGCaGAUCg -3'
miRNA:   3'- -CguCC-UCCUCGu---UgAGCUCCGcUUGG- -5'
5159 3' -54.6 NC_001798.1 + 11159 0.66 0.939753
Target:  5'- -gGGGGGGAaauaaccacgaugGgGGCggUGGGGCGGGCCu -3'
miRNA:   3'- cgUCCUCCU-------------CgUUGa-GCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 11360 0.75 0.51625
Target:  5'- -gGGGGGGGuguuugggugggaucGCAGCUcggcucCGAGGCGGGCCa -3'
miRNA:   3'- cgUCCUCCU---------------CGUUGA------GCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 13057 0.74 0.6027
Target:  5'- cGCAGGGGGAGagcguACUUgcagGAGGCGcgGGCCc -3'
miRNA:   3'- -CGUCCUCCUCgu---UGAG----CUCCGC--UUGG- -5'
5159 3' -54.6 NC_001798.1 + 14186 0.66 0.952046
Target:  5'- cGCGuGGGGGcAGCAcCUCGccaacucgcgacccAGGCGAcgcaggACCu -3'
miRNA:   3'- -CGU-CCUCC-UCGUuGAGC--------------UCCGCU------UGG- -5'
5159 3' -54.6 NC_001798.1 + 14992 0.76 0.483396
Target:  5'- gGCGGGGGGgcgaGGCGugUUgGGGGCGAGCg -3'
miRNA:   3'- -CGUCCUCC----UCGUugAG-CUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 15038 0.67 0.913741
Target:  5'- gGCGGGAgcguGGGGCGgauggGCcCGGGGCGcGCg -3'
miRNA:   3'- -CGUCCU----CCUCGU-----UGaGCUCCGCuUGg -5'
5159 3' -54.6 NC_001798.1 + 15193 0.71 0.763623
Target:  5'- gGguGGGGGGGCuGGCgagcCGGGGgGAGCg -3'
miRNA:   3'- -CguCCUCCUCG-UUGa---GCUCCgCUUGg -5'
5159 3' -54.6 NC_001798.1 + 15346 0.67 0.913741
Target:  5'- aGCGGGGGGcgaGGCggUgaGGGGgGAAUCg -3'
miRNA:   3'- -CGUCCUCC---UCGuuGagCUCCgCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 15422 0.67 0.925055
Target:  5'- cCGGGAGGGGUugUUUGGGGCc--CCg -3'
miRNA:   3'- cGUCCUCCUCGuuGAGCUCCGcuuGG- -5'
5159 3' -54.6 NC_001798.1 + 15760 0.71 0.754055
Target:  5'- -aGGGAGGGGCGucuucuccggaGCggaCGuAGGCGAAUCg -3'
miRNA:   3'- cgUCCUCCUCGU-----------UGa--GC-UCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 16476 0.66 0.949145
Target:  5'- -aAGGAGGAuggGCuGACggcaggCGcGGGUGAGCCg -3'
miRNA:   3'- cgUCCUCCU---CG-UUGa-----GC-UCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 16946 0.69 0.86678
Target:  5'- cCGGGGGGAGCGgggucACUUG-GGUGAAa- -3'
miRNA:   3'- cGUCCUCCUCGU-----UGAGCuCCGCUUgg -5'
5159 3' -54.6 NC_001798.1 + 17667 0.68 0.901475
Target:  5'- cCAGGAGGGGUAGgaucgCGGGGUGGuUCa -3'
miRNA:   3'- cGUCCUCCUCGUUga---GCUCCGCUuGG- -5'
5159 3' -54.6 NC_001798.1 + 18004 0.66 0.949145
Target:  5'- aCAGGAGGAugGCcgcuGGCUCcgggcaggGGGGCG-GCCg -3'
miRNA:   3'- cGUCCUCCU--CG----UUGAG--------CUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 20926 0.68 0.879203
Target:  5'- --uGGGGGAGCAugAUUCGcaggcgucguguugAGGCGGGCg -3'
miRNA:   3'- cguCCUCCUCGU--UGAGC--------------UCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 22292 0.72 0.674406
Target:  5'- cGCGGGcGGAGCGGCg-GcGGCGcGACCa -3'
miRNA:   3'- -CGUCCuCCUCGUUGagCuCCGC-UUGG- -5'
5159 3' -54.6 NC_001798.1 + 22736 0.66 0.953255
Target:  5'- cGCAGGGccgcGGGGCcgAGgUCGcgauGGCGGACg -3'
miRNA:   3'- -CGUCCU----CCUCG--UUgAGCu---CCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 22907 0.67 0.935407
Target:  5'- gGCcGGAGGAG-AACgaagaCGAGGcCGAcgacGCCg -3'
miRNA:   3'- -CGuCCUCCUCgUUGa----GCUCC-GCU----UGG- -5'
5159 3' -54.6 NC_001798.1 + 23794 0.67 0.907726
Target:  5'- uCAGcGGGGAGCcguGGCcCGGGGCcGGCCc -3'
miRNA:   3'- cGUC-CUCCUCG---UUGaGCUCCGcUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.