miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 54 0.68 0.901475
Target:  5'- -gGGGGGGGGCg---CGaAGGCGGGCg -3'
miRNA:   3'- cgUCCUCCUCGuugaGC-UCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 1561 0.68 0.888273
Target:  5'- cGCGGGgacauGGGcaccAGCGugUCGGGGcCGAAgCg -3'
miRNA:   3'- -CGUCC-----UCC----UCGUugAGCUCC-GCUUgG- -5'
5159 3' -54.6 NC_001798.1 + 2058 0.69 0.86678
Target:  5'- aGCAGGcAGGA-CAGCcCGccgcgcucGGCGGACCa -3'
miRNA:   3'- -CGUCC-UCCUcGUUGaGCu-------CCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 2466 0.68 0.894989
Target:  5'- uGCGGGucGGGGCc-CUC--GGCGGGCCg -3'
miRNA:   3'- -CGUCCu-CCUCGuuGAGcuCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 2558 0.86 0.132741
Target:  5'- cGCGGGAGGGGCGGCcgCGGGGCGGGg- -3'
miRNA:   3'- -CGUCCUCCUCGUUGa-GCUCCGCUUgg -5'
5159 3' -54.6 NC_001798.1 + 2684 0.67 0.935407
Target:  5'- gGCGGGcgcGGcGAGCGAgUCGGccgcGGCGAcggugucgGCCa -3'
miRNA:   3'- -CGUCC---UC-CUCGUUgAGCU----CCGCU--------UGG- -5'
5159 3' -54.6 NC_001798.1 + 2958 0.73 0.643715
Target:  5'- cGCAGGcGGGGCGcgucggcguGCggCGGGGCG-GCCg -3'
miRNA:   3'- -CGUCCuCCUCGU---------UGa-GCUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 2998 0.66 0.957134
Target:  5'- cGCGGGccccGGGcGCGGgggCGcGGCGGGCCg -3'
miRNA:   3'- -CGUCC----UCCuCGUUga-GCuCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 4086 0.71 0.763623
Target:  5'- cGCGGGGguccgggccGGGGCgGGCUCGgcccuGGGCGGGCUc -3'
miRNA:   3'- -CGUCCU---------CCUCG-UUGAGC-----UCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 4283 0.66 0.940224
Target:  5'- aGgAGGAGGAgGCGGaggagGAGGCGGaggacGCCg -3'
miRNA:   3'- -CgUCCUCCU-CGUUgag--CUCCGCU-----UGG- -5'
5159 3' -54.6 NC_001798.1 + 4570 0.68 0.874163
Target:  5'- cGCAuGGAGGGgguccGCGGCggaGaAGGCGAGCg -3'
miRNA:   3'- -CGU-CCUCCU-----CGUUGag-C-UCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 4634 0.71 0.773073
Target:  5'- cCGGGGGGGGCGACgggaUCGu-GCGAACg -3'
miRNA:   3'- cGUCCUCCUCGUUG----AGCucCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 4843 0.7 0.800627
Target:  5'- cGCGcGGcGGGGCGACgguccggguUCGGGGUGGGCg -3'
miRNA:   3'- -CGU-CCuCCUCGUUG---------AGCUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 5284 0.68 0.871971
Target:  5'- cGgAGGAGGAGCGA-UCGAcgccgccgcgccccGGCucGCCg -3'
miRNA:   3'- -CgUCCUCCUCGUUgAGCU--------------CCGcuUGG- -5'
5159 3' -54.6 NC_001798.1 + 5896 0.67 0.925055
Target:  5'- cGCGGGcuccgccccgaGGcGGGCccgGACggGGGGCGGGCCg -3'
miRNA:   3'- -CGUCC-----------UC-CUCG---UUGagCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 6249 0.66 0.944802
Target:  5'- gGCGGGGgacGGGGgGACgggcCGGGGgGAcggGCCg -3'
miRNA:   3'- -CGUCCU---CCUCgUUGa---GCUCCgCU---UGG- -5'
5159 3' -54.6 NC_001798.1 + 6522 0.68 0.901475
Target:  5'- -gGGGAcGGGGgGACggGGGGaCGGGCCg -3'
miRNA:   3'- cgUCCU-CCUCgUUGagCUCC-GCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 7800 0.67 0.907726
Target:  5'- gGCGGGAGccaGGGUcgGACagGAGGCGcAGCUg -3'
miRNA:   3'- -CGUCCUC---CUCG--UUGagCUCCGC-UUGG- -5'
5159 3' -54.6 NC_001798.1 + 9116 0.71 0.724742
Target:  5'- cGCGGG-GGAGCcGCcgCGAGGUGGuCUg -3'
miRNA:   3'- -CGUCCuCCUCGuUGa-GCUCCGCUuGG- -5'
5159 3' -54.6 NC_001798.1 + 10284 0.66 0.949145
Target:  5'- uGCGucGGGGGGGCGACggGGGGaCGAc-- -3'
miRNA:   3'- -CGU--CCUCCUCGUUGagCUCC-GCUugg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.