miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 115075 1.15 0.001834
Target:  5'- uGCAGGAGGAGCAACUCGAGGCGAACCg -3'
miRNA:   3'- -CGUCCUCCUCGUUGAGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 126077 0.91 0.064863
Target:  5'- cCAGGAGGAGCAGCUCGAagaggccgcGGCGAACg -3'
miRNA:   3'- cGUCCUCCUCGUUGAGCU---------CCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 2558 0.86 0.132741
Target:  5'- cGCGGGAGGGGCGGCcgCGGGGCGGGg- -3'
miRNA:   3'- -CGUCCUCCUCGUUGa-GCUCCGCUUgg -5'
5159 3' -54.6 NC_001798.1 + 121845 0.82 0.220266
Target:  5'- --cGGAGGAGCAGCUCacggccccggGAGGCGAcacgGCCa -3'
miRNA:   3'- cguCCUCCUCGUUGAG----------CUCCGCU----UGG- -5'
5159 3' -54.6 NC_001798.1 + 102216 0.82 0.242246
Target:  5'- cCGGGAgucgaccGGGcGCGGCUCGGGGCGGGCCu -3'
miRNA:   3'- cGUCCU-------CCU-CGUUGAGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 76477 0.81 0.267291
Target:  5'- aGCAGGcgcGGcGCAGCUCGGGGCuGGCCg -3'
miRNA:   3'- -CGUCCu--CCuCGUUGAGCUCCGcUUGG- -5'
5159 3' -54.6 NC_001798.1 + 86407 0.81 0.273708
Target:  5'- uGCcGGucguGGAcCAGCUCGAGGCGGACCc -3'
miRNA:   3'- -CGuCCu---CCUcGUUGAGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 59663 0.8 0.306943
Target:  5'- -gAGGGGGGGCGACUCGGcucgcgugggggcGGCGGGCa -3'
miRNA:   3'- cgUCCUCCUCGUUGAGCU-------------CCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 45419 0.77 0.418305
Target:  5'- cGCGGGGcuuGGAGCGAC-CGAGGCcccccccGGGCCu -3'
miRNA:   3'- -CGUCCU---CCUCGUUGaGCUCCG-------CUUGG- -5'
5159 3' -54.6 NC_001798.1 + 56511 0.77 0.419185
Target:  5'- gGCAGGGuGGAGCGGaUCGuGGCGGuGCCg -3'
miRNA:   3'- -CGUCCU-CCUCGUUgAGCuCCGCU-UGG- -5'
5159 3' -54.6 NC_001798.1 + 39871 0.77 0.428043
Target:  5'- gGCuucGGGGGugccGGCGucCUCGGGGCGGGCCg -3'
miRNA:   3'- -CGu--CCUCC----UCGUu-GAGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 150418 0.76 0.464546
Target:  5'- aCGGGGGcGGCGGCggcgCGGGGCGGACUc -3'
miRNA:   3'- cGUCCUCcUCGUUGa---GCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 14992 0.76 0.483396
Target:  5'- gGCGGGGGGgcgaGGCGugUUgGGGGCGAGCg -3'
miRNA:   3'- -CGUCCUCC----UCGUugAG-CUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 102477 0.76 0.483396
Target:  5'- gGCGGGAGGAgGCGGguagugCGGGGaCGGGCCg -3'
miRNA:   3'- -CGUCCUCCU-CGUUga----GCUCC-GCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 11360 0.75 0.51625
Target:  5'- -gGGGGGGGuguuugggugggaucGCAGCUcggcucCGAGGCGGGCCa -3'
miRNA:   3'- cgUCCUCCU---------------CGUUGA------GCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 153075 0.75 0.522143
Target:  5'- gGCGGGcGGAGCGg--CGGGGCGGcGCCg -3'
miRNA:   3'- -CGUCCuCCUCGUugaGCUCCGCU-UGG- -5'
5159 3' -54.6 NC_001798.1 + 48628 0.75 0.522143
Target:  5'- gGCGGGAGGGGCGGga-GGGGCGGgaggaaggacacGCCu -3'
miRNA:   3'- -CGUCCUCCUCGUUgagCUCCGCU------------UGG- -5'
5159 3' -54.6 NC_001798.1 + 146403 0.75 0.541965
Target:  5'- aGCAGcaaGAGGGGgGA--CGGGGCGAGCCg -3'
miRNA:   3'- -CGUC---CUCCUCgUUgaGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 27193 0.75 0.549965
Target:  5'- cGCGGGGGGAGgGGCgggggaagccccCGGGGCGGGgCg -3'
miRNA:   3'- -CGUCCUCCUCgUUGa-----------GCUCCGCUUgG- -5'
5159 3' -54.6 NC_001798.1 + 40511 0.75 0.551971
Target:  5'- cGgGGGAGGGGCAagcagACcCGAGGcCGGAUCg -3'
miRNA:   3'- -CgUCCUCCUCGU-----UGaGCUCC-GCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.