miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 48592 0.74 0.562032
Target:  5'- gGCGGGAGGGGCGGga-GGGGCGGGa- -3'
miRNA:   3'- -CGUCCUCCUCGUUgagCUCCGCUUgg -5'
5159 3' -54.6 NC_001798.1 + 48538 0.74 0.562032
Target:  5'- gGCGGGAGGGGCGGga-GGGGCGGGa- -3'
miRNA:   3'- -CGUCCUCCUCGUUgagCUCCGCUUgg -5'
5159 3' -54.6 NC_001798.1 + 48565 0.74 0.562032
Target:  5'- gGCGGGAGGGGCGGga-GGGGCGGGa- -3'
miRNA:   3'- -CGUCCUCCUCGUUgagCUCCGCUUgg -5'
5159 3' -54.6 NC_001798.1 + 96445 0.74 0.562032
Target:  5'- cGCgAGGGGGAGCGGCUCcuGGGCc-ACCu -3'
miRNA:   3'- -CG-UCCUCCUCGUUGAGc-UCCGcuUGG- -5'
5159 3' -54.6 NC_001798.1 + 55993 0.74 0.572142
Target:  5'- cGCGGGGGcGAGgGGCUgGuAGGCGggUCc -3'
miRNA:   3'- -CGUCCUC-CUCgUUGAgC-UCCGCuuGG- -5'
5159 3' -54.6 NC_001798.1 + 36286 0.74 0.576198
Target:  5'- gGCGGGGGGGGguGCcguggguguggcggCGGGGCGcgGGCCg -3'
miRNA:   3'- -CGUCCUCCUCguUGa-------------GCUCCGC--UUGG- -5'
5159 3' -54.6 NC_001798.1 + 30384 0.74 0.582294
Target:  5'- aGCAcGGAcacGGAGaugUUCGAGGCGGGCCu -3'
miRNA:   3'- -CGU-CCU---CCUCguuGAGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 27555 0.74 0.582294
Target:  5'- -gGGGAGGGGCGGCgcccgCGGGG-GAGCg -3'
miRNA:   3'- cgUCCUCCUCGUUGa----GCUCCgCUUGg -5'
5159 3' -54.6 NC_001798.1 + 13057 0.74 0.6027
Target:  5'- cGCAGGGGGAGagcguACUUgcagGAGGCGcgGGCCc -3'
miRNA:   3'- -CGUCCUCCUCgu---UGAG----CUCCGC--UUGG- -5'
5159 3' -54.6 NC_001798.1 + 97603 0.73 0.623194
Target:  5'- cGCAGGGgccggagagcuGGGGCGACaucgCGAcGCGGGCCg -3'
miRNA:   3'- -CGUCCU-----------CCUCGUUGa---GCUcCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 2958 0.73 0.643715
Target:  5'- cGCAGGcGGGGCGcgucggcguGCggCGGGGCG-GCCg -3'
miRNA:   3'- -CGUCCuCCUCGU---------UGa-GCUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 148380 0.73 0.653966
Target:  5'- -gAGGAGGGGCGGg-CGuGGCGGGCa -3'
miRNA:   3'- cgUCCUCCUCGUUgaGCuCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 137483 0.73 0.664199
Target:  5'- -gGGGAGGGG-GGC-CGGGGCaGAGCCg -3'
miRNA:   3'- cgUCCUCCUCgUUGaGCUCCG-CUUGG- -5'
5159 3' -54.6 NC_001798.1 + 148273 0.73 0.664199
Target:  5'- -aAGGAGGGGCGGg-CGuGGCGGGCa -3'
miRNA:   3'- cgUCCUCCUCGUUgaGCuCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 146078 0.73 0.664199
Target:  5'- -gGGGAGGGGUccggggCGAGGCGGGCg -3'
miRNA:   3'- cgUCCUCCUCGuuga--GCUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 22292 0.72 0.674406
Target:  5'- cGCGGGcGGAGCGGCg-GcGGCGcGACCa -3'
miRNA:   3'- -CGUCCuCCUCGUUGagCuCCGC-UUGG- -5'
5159 3' -54.6 NC_001798.1 + 51846 0.72 0.693697
Target:  5'- uGCAcacGGAGGGGCGcgGCUCGgagcucgacgacaGGGCG-GCCg -3'
miRNA:   3'- -CGU---CCUCCUCGU--UGAGC-------------UCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 151172 0.72 0.694708
Target:  5'- aCGGGGGGgugGGCGACa-GGGcGCGGACCg -3'
miRNA:   3'- cGUCCUCC---UCGUUGagCUC-CGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 33700 0.72 0.694708
Target:  5'- aGgAGGAGGAGCAggaagaggagACcCGAGGCaugcAACCg -3'
miRNA:   3'- -CgUCCUCCUCGU----------UGaGCUCCGc---UUGG- -5'
5159 3' -54.6 NC_001798.1 + 111819 0.72 0.694708
Target:  5'- cGCGGGcguccAGGGGCuGGCgCGGGGCGGgaauGCCg -3'
miRNA:   3'- -CGUCC-----UCCUCG-UUGaGCUCCGCU----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.