miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 69648 0.66 0.949145
Target:  5'- uGUGGGGGGGGguGgUgGAGGUGGGg- -3'
miRNA:   3'- -CGUCCUCCUCguUgAgCUCCGCUUgg -5'
5159 3' -54.6 NC_001798.1 + 16476 0.66 0.949145
Target:  5'- -aAGGAGGAuggGCuGACggcaggCGcGGGUGAGCCg -3'
miRNA:   3'- cgUCCUCCU---CG-UUGa-----GC-UCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 18004 0.66 0.949145
Target:  5'- aCAGGAGGAugGCcgcuGGCUCcgggcaggGGGGCG-GCCg -3'
miRNA:   3'- cGUCCUCCU--CG----UUGAG--------CUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 29379 0.66 0.949145
Target:  5'- cCGGGGGcGGGCAccACUCaGGGcCGcGCCg -3'
miRNA:   3'- cGUCCUC-CUCGU--UGAGcUCC-GCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 30759 0.66 0.949145
Target:  5'- cGCGuGGAGGccgaGGCGGC-CGu-GCGGGCCg -3'
miRNA:   3'- -CGU-CCUCC----UCGUUGaGCucCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 49413 0.66 0.949145
Target:  5'- cGCGGGAGGAG-AGCUac---CGGACCg -3'
miRNA:   3'- -CGUCCUCCUCgUUGAgcuccGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 72981 0.66 0.949145
Target:  5'- uCAGGAGGugauggcccacGCGAC-CGAGGaCGcGCCc -3'
miRNA:   3'- cGUCCUCCu----------CGUUGaGCUCC-GCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 92625 0.66 0.949145
Target:  5'- aCGGGGGacgcgcugugcGAGCGGCUCGGacuGGaccCGGACCg -3'
miRNA:   3'- cGUCCUC-----------CUCGUUGAGCU---CC---GCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 108630 0.66 0.948722
Target:  5'- cGCGGGGagacgacGGGGCGACcgaGAGGC--ACCc -3'
miRNA:   3'- -CGUCCU-------CCUCGUUGag-CUCCGcuUGG- -5'
5159 3' -54.6 NC_001798.1 + 138580 0.66 0.944802
Target:  5'- -aGGGGGGGGCAcagcaccaggcACUCGccGCGcuGCCc -3'
miRNA:   3'- cgUCCUCCUCGU-----------UGAGCucCGCu-UGG- -5'
5159 3' -54.6 NC_001798.1 + 6249 0.66 0.944802
Target:  5'- gGCGGGGgacGGGGgGACgggcCGGGGgGAcggGCCg -3'
miRNA:   3'- -CGUCCU---CCUCgUUGa---GCUCCgCU---UGG- -5'
5159 3' -54.6 NC_001798.1 + 29917 0.66 0.944802
Target:  5'- cGCGGGcggugggcucGGGGGCGggacGCUugaCGGGGCcGACCc -3'
miRNA:   3'- -CGUCC----------UCCUCGU----UGA---GCUCCGcUUGG- -5'
5159 3' -54.6 NC_001798.1 + 43023 0.66 0.944802
Target:  5'- cCGGGGGGAGCg---CGGGGCcccGGGCg -3'
miRNA:   3'- cGUCCUCCUCGuugaGCUCCG---CUUGg -5'
5159 3' -54.6 NC_001798.1 + 132129 0.66 0.942084
Target:  5'- uGCAGGcggcccugcgccgccGGGGGcCGGCgggCGGGGCGccCCc -3'
miRNA:   3'- -CGUCC---------------UCCUC-GUUGa--GCUCCGCuuGG- -5'
5159 3' -54.6 NC_001798.1 + 4283 0.66 0.940224
Target:  5'- aGgAGGAGGAgGCGGaggagGAGGCGGaggacGCCg -3'
miRNA:   3'- -CgUCCUCCU-CGUUgag--CUCCGCU-----UGG- -5'
5159 3' -54.6 NC_001798.1 + 95008 0.66 0.940224
Target:  5'- cGCAGGGcGGcGCGGgcCUgGAGGCcgGGGCCc -3'
miRNA:   3'- -CGUCCU-CCuCGUU--GAgCUCCG--CUUGG- -5'
5159 3' -54.6 NC_001798.1 + 100740 0.66 0.940224
Target:  5'- -gGGGAuGGGgGACUUGGGGCGcGCg -3'
miRNA:   3'- cgUCCUcCUCgUUGAGCUCCGCuUGg -5'
5159 3' -54.6 NC_001798.1 + 101015 0.66 0.940224
Target:  5'- cGCGGaGGGGGGCGGgUuugaCGAGGCcaaguuGGCCg -3'
miRNA:   3'- -CGUC-CUCCUCGUUgA----GCUCCGc-----UUGG- -5'
5159 3' -54.6 NC_001798.1 + 122092 0.66 0.940224
Target:  5'- gGCGGGccuGGAGCcgcccGGCggGGGGCGcuuuGCCa -3'
miRNA:   3'- -CGUCCu--CCUCG-----UUGagCUCCGCu---UGG- -5'
5159 3' -54.6 NC_001798.1 + 33171 0.66 0.940224
Target:  5'- -gAGGAGGAGgAGgg-GGGGCGGGCa -3'
miRNA:   3'- cgUCCUCCUCgUUgagCUCCGCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.