miRNA display CGI


Results 41 - 60 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 39769 0.66 0.940224
Target:  5'- cCGGGGGGaAGcCGACcgccugguccCGAGGCGcGACCa -3'
miRNA:   3'- cGUCCUCC-UC-GUUGa---------GCUCCGC-UUGG- -5'
5159 3' -54.6 NC_001798.1 + 150834 0.66 0.939753
Target:  5'- cGCGGGgcgccaGGGGGCGccggucgGgUCGcGGCGGGCUg -3'
miRNA:   3'- -CGUCC------UCCUCGU-------UgAGCuCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 11159 0.66 0.939753
Target:  5'- -gGGGGGGAaauaaccacgaugGgGGCggUGGGGCGGGCCu -3'
miRNA:   3'- cgUCCUCCU-------------CgUUGa-GCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 2684 0.67 0.935407
Target:  5'- gGCGGGcgcGGcGAGCGAgUCGGccgcGGCGAcggugucgGCCa -3'
miRNA:   3'- -CGUCC---UC-CUCGUUgAGCU----CCGCU--------UGG- -5'
5159 3' -54.6 NC_001798.1 + 30936 0.67 0.935407
Target:  5'- gGCGGcGGGGGUcgGGCggGGGGCGGGCg -3'
miRNA:   3'- -CGUCcUCCUCG--UUGagCUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 97255 0.67 0.935407
Target:  5'- gGCGGGcGGAGCAcUUCGAucgcgcguucGG-GGGCCa -3'
miRNA:   3'- -CGUCCuCCUCGUuGAGCU----------CCgCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 22907 0.67 0.935407
Target:  5'- gGCcGGAGGAG-AACgaagaCGAGGcCGAcgacGCCg -3'
miRNA:   3'- -CGuCCUCCUCgUUGa----GCUCC-GCU----UGG- -5'
5159 3' -54.6 NC_001798.1 + 52969 0.67 0.935407
Target:  5'- cCGGGAGGcgcGCGAC-CGggcuGGGCGGcccGCCa -3'
miRNA:   3'- cGUCCUCCu--CGUUGaGC----UCCGCU---UGG- -5'
5159 3' -54.6 NC_001798.1 + 67188 0.67 0.930351
Target:  5'- -gGGGAGGAGgGGg-CGGGGgGAcaGCCu -3'
miRNA:   3'- cgUCCUCCUCgUUgaGCUCCgCU--UGG- -5'
5159 3' -54.6 NC_001798.1 + 149979 0.67 0.929311
Target:  5'- --cGGGGGcGCGGCgcccgcggacgcCGGGGCGAGCg -3'
miRNA:   3'- cguCCUCCuCGUUGa-----------GCUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 15422 0.67 0.925055
Target:  5'- cCGGGAGGGGUugUUUGGGGCc--CCg -3'
miRNA:   3'- cGUCCUCCUCGuuGAGCUCCGcuuGG- -5'
5159 3' -54.6 NC_001798.1 + 5896 0.67 0.925055
Target:  5'- cGCGGGcuccgccccgaGGcGGGCccgGACggGGGGCGGGCCg -3'
miRNA:   3'- -CGUCC-----------UC-CUCG---UUGagCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 153682 0.67 0.924512
Target:  5'- gGCGGGgacgcGGGGGCcgccgccggcgcaGGCUC-AGGCGcGCCa -3'
miRNA:   3'- -CGUCC-----UCCUCG-------------UUGAGcUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 116329 0.67 0.921761
Target:  5'- cGCGGGGGGGcacgagcccgucuacGCGGCggcgugcaaCGuGGCGAcgGCCg -3'
miRNA:   3'- -CGUCCUCCU---------------CGUUGa--------GCuCCGCU--UGG- -5'
5159 3' -54.6 NC_001798.1 + 101982 0.67 0.919518
Target:  5'- --cGGGGGGGCGAUgugCGGcGGCGGcagauagacgGCCu -3'
miRNA:   3'- cguCCUCCUCGUUGa--GCU-CCGCU----------UGG- -5'
5159 3' -54.6 NC_001798.1 + 51336 0.67 0.919518
Target:  5'- gGCGGGuGG-GCggUUCGcGGGUGGugCc -3'
miRNA:   3'- -CGUCCuCCuCGuuGAGC-UCCGCUugG- -5'
5159 3' -54.6 NC_001798.1 + 28778 0.67 0.919518
Target:  5'- aGgAGGAGGAgGCGGCggCGGcGGCGcGCg -3'
miRNA:   3'- -CgUCCUCCU-CGUUGa-GCU-CCGCuUGg -5'
5159 3' -54.6 NC_001798.1 + 101905 0.67 0.919518
Target:  5'- aGCGGG-GGAGCGggAC-CGGGG-GuAACCg -3'
miRNA:   3'- -CGUCCuCCUCGU--UGaGCUCCgC-UUGG- -5'
5159 3' -54.6 NC_001798.1 + 15038 0.67 0.913741
Target:  5'- gGCGGGAgcguGGGGCGgauggGCcCGGGGCGcGCg -3'
miRNA:   3'- -CGUCCU----CCUCGU-----UGaGCUCCGCuUGg -5'
5159 3' -54.6 NC_001798.1 + 26921 0.67 0.913741
Target:  5'- gGCGGGcGGGGGUcgGGCgggCGGGGuCGGGCg -3'
miRNA:   3'- -CGUCC-UCCUCG--UUGa--GCUCC-GCUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.