miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 154392 0.68 0.901475
Target:  5'- -gGGGGGGGGCg---CGaAGGCGGGCg -3'
miRNA:   3'- cgUCCUCCUCGuugaGC-UCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 154083 0.67 0.913741
Target:  5'- gGCAcGGcuGGAGC-GC-CGGGGCGcGGCCg -3'
miRNA:   3'- -CGU-CCu-CCUCGuUGaGCUCCGC-UUGG- -5'
5159 3' -54.6 NC_001798.1 + 153807 0.68 0.894989
Target:  5'- gGCGGGGGGcaGGCGGCggcaggCGcGGCGugcggGGCCu -3'
miRNA:   3'- -CGUCCUCC--UCGUUGa-----GCuCCGC-----UUGG- -5'
5159 3' -54.6 NC_001798.1 + 153682 0.67 0.924512
Target:  5'- gGCGGGgacgcGGGGGCcgccgccggcgcaGGCUC-AGGCGcGCCa -3'
miRNA:   3'- -CGUCC-----UCCUCG-------------UUGAGcUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 153075 0.75 0.522143
Target:  5'- gGCGGGcGGAGCGg--CGGGGCGGcGCCg -3'
miRNA:   3'- -CGUCCuCCUCGUugaGCUCCGCU-UGG- -5'
5159 3' -54.6 NC_001798.1 + 152519 0.69 0.856864
Target:  5'- gGCGGGGgcGGAGgGAgggaaucccccccuCUCGGGGCGGcCCc -3'
miRNA:   3'- -CGUCCU--CCUCgUU--------------GAGCUCCGCUuGG- -5'
5159 3' -54.6 NC_001798.1 + 151584 0.66 0.949145
Target:  5'- gGCGGGcguGGGGCugcccuggcGCUCGgccggGGGCcGGGCCg -3'
miRNA:   3'- -CGUCCu--CCUCGu--------UGAGC-----UCCG-CUUGG- -5'
5159 3' -54.6 NC_001798.1 + 151450 0.7 0.809517
Target:  5'- uGCAGGcAGGgaaaacucuGGCAGCgcaggggCGGGGCGAucucguCCg -3'
miRNA:   3'- -CGUCC-UCC---------UCGUUGa------GCUCCGCUu-----GG- -5'
5159 3' -54.6 NC_001798.1 + 151172 0.72 0.694708
Target:  5'- aCGGGGGGgugGGCGACa-GGGcGCGGACCg -3'
miRNA:   3'- cGUCCUCC---UCGUUGagCUC-CGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 150834 0.66 0.939753
Target:  5'- cGCGGGgcgccaGGGGGCGccggucgGgUCGcGGCGGGCUg -3'
miRNA:   3'- -CGUCC------UCCUCGU-------UgAGCuCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 150418 0.76 0.464546
Target:  5'- aCGGGGGcGGCGGCggcgCGGGGCGGACUc -3'
miRNA:   3'- cGUCCUCcUCGUUGa---GCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 149979 0.67 0.929311
Target:  5'- --cGGGGGcGCGGCgcccgcggacgcCGGGGCGAGCg -3'
miRNA:   3'- cguCCUCCuCGUUGa-----------GCUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 149927 0.66 0.957134
Target:  5'- cGgAGGAGGAGgAGg-CGGcGGCGA-CCg -3'
miRNA:   3'- -CgUCCUCCUCgUUgaGCU-CCGCUuGG- -5'
5159 3' -54.6 NC_001798.1 + 148380 0.73 0.653966
Target:  5'- -gAGGAGGGGCGGg-CGuGGCGGGCa -3'
miRNA:   3'- cgUCCUCCUCGUUgaGCuCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 148273 0.73 0.664199
Target:  5'- -aAGGAGGGGCGGg-CGuGGCGGGCa -3'
miRNA:   3'- cgUCCUCCUCGUUgaGCuCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 147910 0.66 0.953255
Target:  5'- --cGGGGGGGCAgGCgCGGGuCGGGCCc -3'
miRNA:   3'- cguCCUCCUCGU-UGaGCUCcGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 147023 0.66 0.953255
Target:  5'- gGCGGGccGGGGCuuggccGC-CGAGGUGcGCCc -3'
miRNA:   3'- -CGUCCu-CCUCGu-----UGaGCUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 146403 0.75 0.541965
Target:  5'- aGCAGcaaGAGGGGgGA--CGGGGCGAGCCg -3'
miRNA:   3'- -CGUC---CUCCUCgUUgaGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 146078 0.73 0.664199
Target:  5'- -gGGGAGGGGUccggggCGAGGCGGGCg -3'
miRNA:   3'- cgUCCUCCUCGuuga--GCUCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 138580 0.66 0.944802
Target:  5'- -aGGGGGGGGCAcagcaccaggcACUCGccGCGcuGCCc -3'
miRNA:   3'- cgUCCUCCUCGU-----------UGAGCucCGCu-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.