miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 3' -54.6 NC_001798.1 + 137483 0.73 0.664199
Target:  5'- -gGGGAGGGG-GGC-CGGGGCaGAGCCg -3'
miRNA:   3'- cgUCCUCCUCgUUGaGCUCCG-CUUGG- -5'
5159 3' -54.6 NC_001798.1 + 136787 0.69 0.843379
Target:  5'- aGCugcGGAGGAgaagGCAgcggacgcGCUCGAagggagacgcguGGCGGGCCa -3'
miRNA:   3'- -CGu--CCUCCU----CGU--------UGAGCU------------CCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 133304 0.7 0.782396
Target:  5'- uGCAGuGGGAcucgauggccgGgGGgUCGGGGCGAACCu -3'
miRNA:   3'- -CGUCcUCCU-----------CgUUgAGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 132518 0.67 0.911962
Target:  5'- cGCaAGGGGGAGCugcugaucuacaugGACgggucCGGGGCGcGCUc -3'
miRNA:   3'- -CG-UCCUCCUCG--------------UUGa----GCUCCGCuUGG- -5'
5159 3' -54.6 NC_001798.1 + 132129 0.66 0.942084
Target:  5'- uGCAGGcggcccugcgccgccGGGGGcCGGCgggCGGGGCGccCCc -3'
miRNA:   3'- -CGUCC---------------UCCUC-GUUGa--GCUCCGCuuGG- -5'
5159 3' -54.6 NC_001798.1 + 130640 0.7 0.791584
Target:  5'- uCAGGcAGauGAGCAuGCUCGGGGCGGAa- -3'
miRNA:   3'- cGUCC-UC--CUCGU-UGAGCUCCGCUUgg -5'
5159 3' -54.6 NC_001798.1 + 126118 0.66 0.949145
Target:  5'- uGUGGGGGGAcgGCGACcu--GGCGGACg -3'
miRNA:   3'- -CGUCCUCCU--CGUUGagcuCCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 126077 0.91 0.064863
Target:  5'- cCAGGAGGAGCAGCUCGAagaggccgcGGCGAACg -3'
miRNA:   3'- cGUCCUCCUCGUUGAGCU---------CCGCUUGg -5'
5159 3' -54.6 NC_001798.1 + 125654 0.72 0.711801
Target:  5'- cGCGGGcgaggcGGGGGCGGCugaggucaggggggUCGGGGCGAAg- -3'
miRNA:   3'- -CGUCC------UCCUCGUUG--------------AGCUCCGCUUgg -5'
5159 3' -54.6 NC_001798.1 + 124505 0.66 0.953255
Target:  5'- gGCGGGGGGGG-GGCUgCG-GGCGugUCg -3'
miRNA:   3'- -CGUCCUCCUCgUUGA-GCuCCGCuuGG- -5'
5159 3' -54.6 NC_001798.1 + 122092 0.66 0.940224
Target:  5'- gGCGGGccuGGAGCcgcccGGCggGGGGCGcuuuGCCa -3'
miRNA:   3'- -CGUCCu--CCUCG-----UUGagCUCCGCu---UGG- -5'
5159 3' -54.6 NC_001798.1 + 122051 0.69 0.858412
Target:  5'- aGCGGG-GGAGCccugggcgcgucgGACgcgGAGGCGGugCu -3'
miRNA:   3'- -CGUCCuCCUCG-------------UUGag-CUCCGCUugG- -5'
5159 3' -54.6 NC_001798.1 + 121845 0.82 0.220266
Target:  5'- --cGGAGGAGCAGCUCacggccccggGAGGCGAcacgGCCa -3'
miRNA:   3'- cguCCUCCUCGUUGAG----------CUCCGCU----UGG- -5'
5159 3' -54.6 NC_001798.1 + 121693 0.68 0.871971
Target:  5'- gGCuGGGGGccGCGGCUCccgccgccgcgacgGAGGCGGcgGCCc -3'
miRNA:   3'- -CGuCCUCCu-CGUUGAG--------------CUCCGCU--UGG- -5'
5159 3' -54.6 NC_001798.1 + 116329 0.67 0.921761
Target:  5'- cGCGGGGGGGcacgagcccgucuacGCGGCggcgugcaaCGuGGCGAcgGCCg -3'
miRNA:   3'- -CGUCCUCCU---------------CGUUGa--------GCuCCGCU--UGG- -5'
5159 3' -54.6 NC_001798.1 + 115075 1.15 0.001834
Target:  5'- uGCAGGAGGAGCAACUCGAGGCGAACCg -3'
miRNA:   3'- -CGUCCUCCUCGUUGAGCUCCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 113996 0.68 0.871236
Target:  5'- uGCGGGAGGGGCuuggccuucccgAGCUCGGcuugauggagccuGCGAAUCc -3'
miRNA:   3'- -CGUCCUCCUCG------------UUGAGCUc------------CGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 112772 0.66 0.958623
Target:  5'- cGCgGGGAGGGcggacgcacggauguGCGGCUC---GCGAACCa -3'
miRNA:   3'- -CG-UCCUCCU---------------CGUUGAGcucCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 112406 0.68 0.887589
Target:  5'- uGCAGGGuGGuGGCAuagcugaGCUCcauggccGGCGAGCCa -3'
miRNA:   3'- -CGUCCU-CC-UCGU-------UGAGcu-----CCGCUUGG- -5'
5159 3' -54.6 NC_001798.1 + 111819 0.72 0.694708
Target:  5'- cGCGGGcguccAGGGGCuGGCgCGGGGCGGgaauGCCg -3'
miRNA:   3'- -CGUCC-----UCCUCG-UUGaGCUCCGCU----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.