miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5159 5' -55.5 NC_001798.1 + 2534 0.67 0.869166
Target:  5'- -cGGcgGGGCg-GggGGCGCggCCCCCGc -3'
miRNA:   3'- gaCCuaCUUGagCuuUCGCG--GGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 4116 0.78 0.315892
Target:  5'- cCUGGgcGGGCUCGGccgGGGCGCCgCCCCc -3'
miRNA:   3'- -GACCuaCUUGAGCU---UUCGCGG-GGGGu -5'
5159 5' -55.5 NC_001798.1 + 15375 0.69 0.766335
Target:  5'- -cGGccGUGGGCgcggCGGAGGCGCCCaCCGg -3'
miRNA:   3'- gaCC--UACUUGa---GCUUUCGCGGGgGGU- -5'
5159 5' -55.5 NC_001798.1 + 25709 0.67 0.861615
Target:  5'- cCUGGgcGGGCaacUGGAccGGCGCCCCCg- -3'
miRNA:   3'- -GACCuaCUUGa--GCUU--UCGCGGGGGgu -5'
5159 5' -55.5 NC_001798.1 + 31365 0.66 0.903591
Target:  5'- -cGGGUGGGCgaagacgccgCGGcggcggagggcAGGaCGCCCCCCGc -3'
miRNA:   3'- gaCCUACUUGa---------GCU-----------UUC-GCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 32832 0.68 0.849102
Target:  5'- -aGGggGAgcuaacACUCGGcuugcugcccgaaggAAGcCGCCCCCCAc -3'
miRNA:   3'- gaCCuaCU------UGAGCU---------------UUC-GCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 47230 0.71 0.687246
Target:  5'- -gGGGUGGGCgugUCGuuGGGCGgCCCCCGg -3'
miRNA:   3'- gaCCUACUUG---AGCu-UUCGCgGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 49266 0.69 0.766335
Target:  5'- aCUGGggGGAUgcgcaCGuccccGAGCGCUCCCCGa -3'
miRNA:   3'- -GACCuaCUUGa----GCu----UUCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 49860 0.71 0.677055
Target:  5'- -cGGAgGAACcCG-GGGCGCCCCUCAc -3'
miRNA:   3'- gaCCUaCUUGaGCuUUCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 50402 0.69 0.794261
Target:  5'- -aGGAUGuGCgacCGGGcggcGCGCCCCCCc -3'
miRNA:   3'- gaCCUACuUGa--GCUUu---CGCGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 54864 0.66 0.903591
Target:  5'- cCUGGcc-GGC-CGAAAGCcacGCCCCCCc -3'
miRNA:   3'- -GACCuacUUGaGCUUUCG---CGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 59352 0.66 0.926913
Target:  5'- -gGGGUGGAaaggaCGGAGGCGCaaCCCGg -3'
miRNA:   3'- gaCCUACUUga---GCUUUCGCGggGGGU- -5'
5159 5' -55.5 NC_001798.1 + 60044 0.73 0.544191
Target:  5'- -aGGAaGAACUUGAGGGU-CCCCCCGc -3'
miRNA:   3'- gaCCUaCUUGAGCUUUCGcGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 63401 0.66 0.909781
Target:  5'- -cGGAUGAACccgaucUCGAuauccacCGCCUCCCGa -3'
miRNA:   3'- gaCCUACUUG------AGCUuuc----GCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 66618 0.68 0.845893
Target:  5'- -aGcAUGAGCgcgggcucgcggUCGAcGGCGUCCCCCAg -3'
miRNA:   3'- gaCcUACUUG------------AGCUuUCGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 72983 0.67 0.861615
Target:  5'- -aGGAggUGAuggcccacgcgAC-CGAGGacGCGCCCCCCAg -3'
miRNA:   3'- gaCCU--ACU-----------UGaGCUUU--CGCGGGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 75768 0.7 0.7471
Target:  5'- cCUGGAgc-GCUCGc--GCGCCCaCCCGa -3'
miRNA:   3'- -GACCUacuUGAGCuuuCGCGGG-GGGU- -5'
5159 5' -55.5 NC_001798.1 + 76687 0.73 0.574489
Target:  5'- -cGGcgGAGCUCGcuccgGAGGCGCgCUCCCGg -3'
miRNA:   3'- gaCCuaCUUGAGC-----UUUCGCG-GGGGGU- -5'
5159 5' -55.5 NC_001798.1 + 76903 0.67 0.895191
Target:  5'- -gGGGUGGAC-CGAccuGGCcgaugccguccgggGCCCCCCc -3'
miRNA:   3'- gaCCUACUUGaGCUu--UCG--------------CGGGGGGu -5'
5159 5' -55.5 NC_001798.1 + 81182 0.66 0.919755
Target:  5'- -cGGggGAGCUguuccCGGGacacccgguuuaccAGCGCCCCCUc -3'
miRNA:   3'- gaCCuaCUUGA-----GCUU--------------UCGCGGGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.